Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01811 ATGTCTTGCTCCGTCGCGGTTTCCAATTCGCCGGTCTTCTCCCCCTCCTCTTCTCTCTTCTGCTCTAAGCCTTCCATCATCTCTTCTTCGCCCGAATCCCTTTCGCTCTCCCTCTCCCACCTCAAACCTTCCAACACTAACACGGCGTCGTCTTGTTCTTCTCCTTCTGCTGCGGCTGCTTCTTCCTCTCCTTCTTCTCCTTTTCGCCTTCGCCTTCCCAAGCCTCCCTCTGTCTTCTCCGCCTCCTCTGCTTCCTCCACGTCCCCCAACGGCACCGTTTTGAAGAGGAAGCGACCGGCCAGACTCGACATACCCGTTTCCTCTCTCACCTTCGGGGTTCCGCCCACGCCCTCCGCAGCGGCGCGTGACGTCGTCGAGGCGGAGGAGGATGGCTTTGGGGTGTACTGCAAGAGAGGGAGGAGGGAGTACATGGAGGACCGTTACACCGCTGGGAATAATTTACGCGGTGAAAACAAACTGGCTTTTTTTGGCATATTTGATGGGCACGGAGGTGCCAAGGCTGCTGAGTATGCTGCAAATAACTTAGAGAAGAATATCTTAGATGAAGTGATTATGAGAGATGAAGATGATGCTGAGGAGGCAGTGAAGCGTGGGTACCTCAACACAGACTCAGATTTCCTGAAGGAGGATCTCCATGGTGGCTCTTGCTGTGTGACAGCATTGATTAGGAACGGCAACCTTGTTGTGTCCAACGCTGGTGATTGCCGTGCTGTCATTAGCAGAGGGGGTGTTGCTGAAGCCCTAACATCTGATCACAGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAGAACCTGGGTGGCTACGTGGATTTATGCCGCGGTGTTTGGAGGATCCAAGGATCTCTTGCTGTGTCTAGGGGAATTGGAGATAGACACCTGAAACAATGGGTGACAGCAGAACCCGAGACCAAAGTTCTCAGAATTGAACCTGAACATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGATAAGGTTAGTAATCAGGAGGCAGTAGACATTGCTCGTTCTTTTCTCATGGGCAGCAACAAATCACAACCATTGCTGGCTTGTAAAAAGCTTGTAGATTTGTCTGTTTCACGAGGCTCCATGGATGATACAAGCGTTATGCTAATCAAGTTAGAACACTATGTTTAA 1161 0.5065 MSCSVAVSNSPVFSPSSSLFCSKPSIISSSPESLSLSLSHLKPSNTNTASSCSSPSAAAASSSPSSPFRLRLPKPPSVFSASSASSTSPNGTVLKRKRPARLDIPVSSLTFGVPPTPSAAARDVVEAEEDGFGVYCKRGRREYMEDRYTAGNNLRGENKLAFFGIFDGHGGAKAAEYAANNLEKNILDEVIMRDEDDAEEAVKRGYLNTDSDFLKEDLHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIENLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNQEAVDIARSFLMGSNKSQPLLACKKLVDLSVSRGSMDDTSVMLIKLEHYV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01811 386 SMART PP2C_4 121 380 IPR001932 -
Viun8g01811 386 Pfam Protein phosphatase 2C 132 374 IPR001932 -
Viun8g01811 386 CDD PP2Cc 131 382 IPR001932 -
Viun8g01811 386 ProSitePatterns PPM-type phosphatase domain signature. 162 170 IPR000222 GO:0043169
Viun8g01811 386 Gene3D - 122 385 IPR036457 -
Viun8g01811 386 FunFam probable protein phosphatase 2C 25 124 385 - -
Viun8g01811 386 MobiDBLite consensus disorder prediction 36 99 - -
Viun8g01811 386 MobiDBLite consensus disorder prediction 78 93 - -
Viun8g01811 386 MobiDBLite consensus disorder prediction 36 68 - -
Viun8g01811 386 PANTHER PROTEIN PHOSPHATASE 2C 71 380 IPR015655 GO:0004722|GO:0006470
Viun8g01811 386 SUPERFAMILY PP2C-like 132 383 IPR036457 -
Viun8g01811 386 ProSiteProfiles PPM-type phosphatase domain profile. 131 382 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01811 Viun-Chr8 29054726 29057099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01811 1 386 PP2C-type Phosphatase Gene Family AT2G30020 64.179 1.20e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01811 K17506 - gmx:100797934 606.29