Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01807 ATGGATGTTGATGGTGGTGAGAAGTGTTATGAGAGCACTAAACGTAAGAGAGGGTCCAGGAAAAAAAAGCTTCTTGTCAACGACAGAGTCGAGGTAAAAAGCGTGGAAGAGGGTTTTCTGGGTTCATGGCACCCGGGGACGGTGGTCCGTTGCGAGAAGCAGAAGCGTTATGTAAAATATGACAATATTCTAGATGATGATGAATCAGATTACCTTGTGGATGGGGTGTGTGTTTCAGCTGTTTTGGATGGTCACAGTTCTTCCGATTTTAGCAATGAACAAGGATTCATCAGACCTTTGCCTCCTCCGTTTGAGTTTGGGGAGAGGGACCTTCCGTTTGGTCTGTGTGTTGATGTAAATTATCAAGAAGGCTGGTGGGAAGGAGTTATATTTGATCACTGCAATGGAATGGGGGAGAGGAGCGTGCTCTTCCCAGATTTGGGCGATGAAATGAAGGTAGGAACTCATCAATTGCGGATAACTCAGGATTGGGATGAAGCTACTGAGAATTGGGAGCCACGAGGGAAGTGGGTGTTCCTTGAAGTAGTTCAGGAGTGTGAAAAGGAATCCTTTGTTGCAGTTTCAGTGAAGCAAATATGGTATGATATAAGGACTAGGGAGGATTTTGACAACATAAAACATTGGACTTGTAATGATAAGGATTTGTGGAGAGCCCTTGTAGAGGAGGTGGTTGGTGACTACTATGTTCTCACACTGGAAGAAGTTTTCCCTGCTTTAAACCTTCCTGAGGATTTCCTGAAAGAAACACCAGAACTGAACTCAGTTGAACCTACTGACAACATTCACTGTGATGCTGCACACACTAATGCATTTGGTTCTGACACTGGAGTTTCTGATAGCCCTATGGAAAAAAGTGATAGCATCATTTGCTTTAAAGAGGAATACGATAGAGATCCTTTGATGGATGGGGCATCAGAGAAGAAAATTATTGTGCAGGAGGAACCTGTATCTGCTGTTCAGGAGATCATGACTGGTGCTGGTGAAATAAAGCAGAATGGTAGTTGTTGCTCAAAGAAGAGAAAACGCAGAAGCTCAGTGTCCGTTAGTTGGAAACCTGTGGCACTGACCAAGGTTGAATTCTGTCCTGATGTTGTTAACCAGTATTTACTTGGATGTGGTAGCAAGACCATTAGGGAACTTTTGAAGATTAAGGTATGGAAGCATCTAGCATATCTTGGATGGAAAATTGAGTGGACAGAAGATAGGCATCATCCTGGAAGAGGACGCTACAGGTACATGTCACCTGATGCACAGGACGAGAAGCTTTACTATTCAATTATTCAAGTTTTGACACATATGCAATTGAAGTCCAACGTGAACACTATGCATCCCCAAGTTGACCAAAGTAGGATCGGTTCTGCAAATGGCTCTAACAATTCACTTTTGCTTTCAGACCAGGATCTAGATGTTTGTCCTCCAAAGGGAAGTGTTGGGCATGTTGATAGTGATGATCTATCGCAAACCTTGTCCCAATTTCTTCGAAAAAAGCCTGAATTGCGTAGTGCTTCACCAGCAAATGTATCAACTGAGAATAGAAAACATAAACACTCCAGGAATTCAAAGGCCATCATGCCAAAGTGTGACAGGAAAGGGTCACGACGACCACGACCAGAATGTCTAAGATCAAGCAAAAGGGTGCTGTCTGCTCCAACTGTGTCACAACAACGACCTCAAAATGTTCTGTCTTGGTTAATAGATAGGGAGATACTGATGCCAAGATGTAAGGTCTATTACTGGGAAGAAGGAGGAAGTAACACTGATTCAGCTCAGGGGAGGGTTACTTATGATGGGATTAAGTGTAGCTGTTGCCAGAAAATATATGGTATTCGGGGCTTTGTAAATCATGCTGGTGGAAGTGGTGAGTGCAAGCCTGCTGCCAGCATATTTTTGAAGGATGGTAGGTCACTCTTAGATTGCATGATAGAAGCAATGCACGATGATAGAACAAGGGAAGATATGAACAAACCATGCAATGATCTGTTGAGAGGAGAGAATGACGACATTTGTTCTGTCTGTCAATATGGTGGTGAACTTATTTTATGCGACCAATGTCCATCCGCATTTCATTGGACATGTCTTGGTTTGAATGATATCCCTCATGGTGACTGGTTTTGCCCATCATGTTGTTGTGCGATTTGCAGCCAAATCAAAACAGAAGGGTCTGAGAATGTACCTTTTCTTACTTGCATTCAATGTGAACGTAAATACCACGTTGGATGCTTGAAAAATAGAGAAAAGGATAAGTCAAGAAGATATATGGAAAATTGGTTGTGTGGAGAAGAGTGTGAACAGATATATGCAGGCCTACAAAGTCTATTAGGAAAGCCACTTATTGTGGGTCCGAACAATCTAACTTGGACACTGGAGAAGCTTAACAACTCTGAGAGTTCTGATGTTGGCAGTTCTCTGAATGACTTATTGGCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGATCCCCTAAAGAACCCTTTCACTGGTAGAGATATCATTGATGATGTTATATTCAACTCTAGGTCTGAGCTCAATCGATTGAATTTCCAGGGTTTCTACATTGTACTTCTGGAGCAAAATGAAGAATTGATTAGTGTAGCAACTATTAGGGTGTTTGGACAGAAAGTAGCTGAGGTACCACTTGTAGGTACCAGAATACAATATCGTCGACTAGGAATGTGTCGCATTTTAATGAATGAGCTTGAAAAGAACCTCATGCAACTGGGAGTGGAGAGGCTAGTTTTGCCTGCTGTTCCTGCTGTGCTAGAAACTTGGACAAAATCTTTTGGCTTTGCACAGATGTCAAATTTCGACAGGTCACAATTCTTGGACTGTGCTTTCCTAGATTTTCAGGAAACTGTCATGTGCCAGAAGTTGCTGACAAGGATTCCCTCACCCCAGTCAGGTGTAACAAGAGAAACTCAACGAAAAGCACACGATGTTTTTACTCTTAGATGTAGAATTGAGTTTGAGAAGTCCAGTTCAGCATCAGAAGTAGACCAAGCTGAAGAGATAGAGAGAAGTAGGATGGATCAGCAAGTGGTGGAGTGTGTTTCAACTCTTCCAACTTCATAA 3111 0.4243 MDVDGGEKCYESTKRKRGSRKKKLLVNDRVEVKSVEEGFLGSWHPGTVVRCEKQKRYVKYDNILDDDESDYLVDGVCVSAVLDGHSSSDFSNEQGFIRPLPPPFEFGERDLPFGLCVDVNYQEGWWEGVIFDHCNGMGERSVLFPDLGDEMKVGTHQLRITQDWDEATENWEPRGKWVFLEVVQECEKESFVAVSVKQIWYDIRTREDFDNIKHWTCNDKDLWRALVEEVVGDYYVLTLEEVFPALNLPEDFLKETPELNSVEPTDNIHCDAAHTNAFGSDTGVSDSPMEKSDSIICFKEEYDRDPLMDGASEKKIIVQEEPVSAVQEIMTGAGEIKQNGSCCSKKRKRRSSVSVSWKPVALTKVEFCPDVVNQYLLGCGSKTIRELLKIKVWKHLAYLGWKIEWTEDRHHPGRGRYRYMSPDAQDEKLYYSIIQVLTHMQLKSNVNTMHPQVDQSRIGSANGSNNSLLLSDQDLDVCPPKGSVGHVDSDDLSQTLSQFLRKKPELRSASPANVSTENRKHKHSRNSKAIMPKCDRKGSRRPRPECLRSSKRVLSAPTVSQQRPQNVLSWLIDREILMPRCKVYYWEEGGSNTDSAQGRVTYDGIKCSCCQKIYGIRGFVNHAGGSGECKPAASIFLKDGRSLLDCMIEAMHDDRTREDMNKPCNDLLRGENDDICSVCQYGGELILCDQCPSAFHWTCLGLNDIPHGDWFCPSCCCAICSQIKTEGSENVPFLTCIQCERKYHVGCLKNREKDKSRRYMENWLCGEECEQIYAGLQSLLGKPLIVGPNNLTWTLEKLNNSESSDVGSSLNDLLAEKYSKLSVALSVMHECFDPLKNPFTGRDIIDDVIFNSRSELNRLNFQGFYIVLLEQNEELISVATIRVFGQKVAEVPLVGTRIQYRRLGMCRILMNELEKNLMQLGVERLVLPAVPAVLETWTKSFGFAQMSNFDRSQFLDCAFLDFQETVMCQKLLTRIPSPQSGVTRETQRKAHDVFTLRCRIEFEKSSSASEVDQAEEIERSRMDQQVVECVSTLPTS 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01807 1036 CDD Tudor_Agenet_AtDUF_rpt1_3 26 102 - -
Viun8g01807 1036 Gene3D - 846 971 - -
Viun8g01807 1036 MobiDBLite consensus disorder prediction 500 553 - -
Viun8g01807 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 718 772 IPR013083 -
Viun8g01807 1036 Pfam PHD-finger 675 716 IPR019787 -
Viun8g01807 1036 Pfam Agenet domain 27 102 IPR008395 -
Viun8g01807 1036 SUPERFAMILY FYVE/PHD zinc finger 658 715 IPR011011 -
Viun8g01807 1036 MobiDBLite consensus disorder prediction 528 548 - -
Viun8g01807 1036 SMART PHD_3 717 769 IPR001965 -
Viun8g01807 1036 SMART PHD_3 675 716 IPR001965 -
Viun8g01807 1036 PANTHER PHD FINGER PROTEIN 12 381 1021 IPR042163 GO:0003714|GO:0045892
Viun8g01807 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 717 IPR013083 -
Viun8g01807 1036 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 861 950 IPR016181 -
Viun8g01807 1036 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 811 972 IPR000182 GO:0016747
Viun8g01807 1036 SMART agenet_At_2 22 86 IPR014002 -
Viun8g01807 1036 SMART agenet_At_2 109 166 IPR014002 -
Viun8g01807 1036 Pfam Tify domain binding domain 598 650 IPR032308 -
Viun8g01807 1036 ProSiteProfiles Zinc finger PHD-type profile. 673 718 IPR019787 -
Viun8g01807 1036 CDD NAT_SF 866 927 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01807 Viun-Chr8 28944575 28949867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01807 24 915 PHD Transcription Factor Family AT5G58610 37.029 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun8g01807 Agenet 3.9e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01807 - - vra:106763506 1856.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01807 8 28944575 28949867 Viun8g01807 8 28944575 28949867 ECH
Viun6g01149 6 20850588 20860635 Viun8g01807 8 28944575 28949867 PCT