Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01797 ATGTGCGGTGTTTCCAAGGGGAAACCTTCTGAAATGGGTCTAGCGATGGAGGATGACTGTAGAAAAGAAGAGATGCATCATAGAATTTCTGCTTTGCTTGAGTTTTCTGCTGCGGATGATCTAATTGGCTTCAAAGACGCTGTTGAAAAGGAGGGTCATGATGTTGATGGGGTGGGGTTGTGGTACGGAAGGCGTGCTGGCTCAAAGAAAATACGTTATGAAGAGAGGACTGCTCTCATGGTTGCTGCTACTTTTGGAAGCGTTGATGTGTCTGCTTATATTATTGGAACTGGTCTTGTTGATGTTAACAGGGCCAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGCGGTTCTGCTGCTTCTGTTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTGGTGCTGTTGATGCTGATGGTAACAGGCCAATTGACTTGATTGTCTCTGTGGCTTATTCTATCTTCAGTCCCAGGGCCAGGGTGCTACAGGCCCTTCTGGATGGTACCTGTGATGCTGCTGCTGCTGCTGATCAAACATGTTTCTCACCTCCACAAGTGATGGACCAAATTGAGGAACAAAGGCAAGAAATGACCACACCTCGTGTGTCAAAAGATTATCCCATTGATCTGTCCCTTCCAGACATAAAGAATGGGATATATGGCACTGATGAGTTTAGGATGTATACATTCAAGGTGAAGCCTTGTTCCAGGGCCTATTCTCATGACTGGACCGAGTGCCCCTTTGTTCATCCAGGGGAGAACGCAAGGCGACGTGATCCAAGGAAATACCATTACAGCTGTGTCCCTTGTCCTGAGTTTAGGAAGGGATCTTGCAGCAAAGGGGATGCCTGTGAGTACGCTCATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACAAGGCTCTGCAAGGATGAGAGTGGATGCACAAGGAGAGTTTGCTTCTTTGCACACAAGCCAGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCTATTCCTTCTCCAAGGTCCTATTCTGCTGGTGCTTCTGCATTGGAGATGGGTGCAGTTAGCCCAATTGCACTTGGTTCTCCATCTGTCTTGATACCAACTTCCTCAACACCACCTATGACTCCATCTGGAGGATCTTCTCCGATTACTGGTTCCATCTGGTCTCAGTCTAATGTTTCAGTCCCCACCCTGCAGCTGCCCAAAAGCAGGTTGCAGACTGCTTCAACTGCAAGAGACATTGATTTGGACTTTGAACTGCTTGGACTTGAAGCTCATCGGCGTAGACAACAGCTGATGATGGATGACATGTCTGGTCTTTCCTCTCCTAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCGTGTTTCTATGAGTGATCACATTGGGGAGTTAAATAGGCTTTCAGGGGTGAAGCCTTCTAACCTTGAGGATGCTTTTGGATCTCTTGAACCATCAATTTTGTCCAAATTCCATGGAATCTCACTTGATGCTGCAGGACCTCAGTTACAATCTCCAAGTGGAATCCAAATGCGTTCGAATATGAACCAGCAGCTGGGAGGGTATTCCTCGGGCCTTGCCACCTCAAACATGGTTGGATCAAGATCCTTCAGGGTTGATCCTTCTGCTGAAGGAGCCTCAGTGGCTTTGAATCCAAGAGCTGCTGCTTTTGCTAAGCGTAGCCACAGCTTTATCGAGCGAAGCATGGTGAACCATCATTCTGAGCTTCCTTCTCCAAAGGTCTCTACTTTCTCTAACTGGGGCTCACCTGATGGAAAACTGGATTGGGCTATAAATGGAGATGAGCTGAATAAGCTGAGGAAATCTGCTTCCTTTGGGTTTCGAAGCAGCAACAGTCCTCCTACAAAGGATTCAACCAAAATGCCTGCAAATGTTGATGATGAGCCAGACGTGTCTTGGGTTAACTCACTTGTTAAGGATGCTTCACCAGAATCTGGTGTTGAAGATCAGCCAAAGCAATGCCATAATGGAACAGAAGCAATTCCAGCGTGGTTGGAGCAAATGTACTTGGATCAGGAGCAAATGGTGGCATGA 2076 0.4725 MCGVSKGKPSEMGLAMEDDCRKEEMHHRISALLEFSAADDLIGFKDAVEKEGHDVDGVGLWYGRRAGSKKIRYEERTALMVAATFGSVDVSAYIIGTGLVDVNRASRSDGATALHCAVAGGSAASVEVVKLLLDASADVGAVDADGNRPIDLIVSVAYSIFSPRARVLQALLDGTCDAAAAADQTCFSPPQVMDQIEEQRQEMTTPRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSAGASALEMGAVSPIALGSPSVLIPTSSTPPMTPSGGSSPITGSIWSQSNVSVPTLQLPKSRLQTASTARDIDLDFELLGLEAHRRRQQLMMDDMSGLSSPNWKNSMPNSPSFRVSMSDHIGELNRLSGVKPSNLEDAFGSLEPSILSKFHGISLDAAGPQLQSPSGIQMRSNMNQQLGGYSSGLATSNMVGSRSFRVDPSAEGASVALNPRAAAFAKRSHSFIERSMVNHHSELPSPKVSTFSNWGSPDGKLDWAINGDELNKLRKSASFGFRSSNSPPTKDSTKMPANVDDEPDVSWVNSLVKDASPESGVEDQPKQCHNGTEAIPAWLEQMYLDQEQMVA 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01797 691 MobiDBLite consensus disorder prediction 618 633 - -
Viun8g01797 691 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Viun8g01797 691 Gene3D - 31 162 IPR036770 -
Viun8g01797 691 SUPERFAMILY Ankyrin repeat 71 177 IPR036770 -
Viun8g01797 691 Pfam Ankyrin repeats (many copies) 75 133 IPR002110 GO:0005515
Viun8g01797 691 PANTHER UNKEMPT FAMILY MEMBER 34 654 IPR045234 -
Viun8g01797 691 Gene3D - 271 333 - -
Viun8g01797 691 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Viun8g01797 691 SMART ANK_2a 74 104 IPR002110 GO:0005515
Viun8g01797 691 SMART ANK_2a 109 141 IPR002110 GO:0005515
Viun8g01797 691 MobiDBLite consensus disorder prediction 618 644 - -
Viun8g01797 691 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Viun8g01797 691 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Viun8g01797 691 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Viun8g01797 691 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Viun8g01797 691 SMART c3hfinal6 270 296 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01797 Viun-Chr8 28852233 28855294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01797 1 686 C2H2 Transcription Factor Family AT5G12850 37.995 1.74e-142 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun8g01797 Ank_4 3.8e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01797 - - gmx:100795085 1137.87