Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01778 ATGGGGAGGTTGTTGATGTTAATCTCGTTAGAGACAAGGGCACCGGAAAATCAAAGGGTTTTGCGTTCCTTGCGTATGAGGATCAAAGGAGCACAAATCTTGCTGTGGATTTTGGGGAGAATTATTAGGGTGGACCATGTTGACAAGTACAAGAAGAAAGAGGAAGAGGACGAGGAGACAGAGCGGCAGAAGAGGGAGGCACGGGGCGTTTGTCGTGCGTTTCAAAGGGGTGATTGTACTCGTGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAAGAGCTGCAAATACAGGTTGGGGTCAGGAGGAAGACAATCCAAAATGGGGTCACGACAAATTTGAGGGTCCCAAAAAAGAGAGGAGATCTGGCAACAATCAACCAAATCATAATTCAGAAACTAGAGACAGAGATTCACGTTCTAAAGCCCGTGCCAATGATGGATTCAACAACCTACCTAAGAGAAGTGATAGAGAAGAGAGGTCGAGGCGGTGGCATGATGACGATGATGATAAGGGAAGAGAAAATAATAGTAGAAGAGAAGAGAAGGGATCAAGAAGGTATGGGGATGATGAATTTGAACATAAGCCAAGAGAAGAGCGATATAGGAGAGAAGAAAAGAAATCAAGAAAGGATGATTACGATGATATTCCTGAGCAAAAAGATCATCGTAGAAGGGAAGACAAGAAGTCAATAAAGCCAGATGATGGTGAGTGTGAACCCAAGTTGAGAGATTCGGACATAAGGGAAGATAAAAGATCCCGGAGGAAGGATGGAGATGATTTTGTAAGCAAGGCAAGAGAACCTCATAGTAACAGGGAAGACAGGAGATCTCGAAAACACAGTGAAGATGAATCTGCACCAAGGTCAAGAGAAGATTATGATAGGAAGCAAGATAACAGGTTTTATAGAAGTGATAGTGATAGACCAGAGTCAAAAGTAAGACATGATTATGATTTTGAGAGGAGGGAAGAGAAAAGGTCAAGAAGGTAA 990 0.4303 MGRLLMLISLETRAPENQRVLRSLRMRIKGAQILLWILGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGDCTRGASCKFSHDEQRAANTGWGQEEDNPKWGHDKFEGPKKERRSGNNQPNHNSETRDRDSRSKARANDGFNNLPKRSDREERSRRWHDDDDDKGRENNSRREEKGSRRYGDDEFEHKPREERYRREEKKSRKDDYDDIPEQKDHRRREDKKSIKPDDGECEPKLRDSDIREDKRSRRKDGDDFVSKAREPHSNREDRRSRKHSEDESAPRSREDYDRKQDNRFYRSDSDRPESKVRHDYDFERREEKRSRR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01778 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 70 90 IPR000571 GO:0046872
Viun8g01778 329 ProSiteProfiles Zinc finger C3H1-type profile. 65 92 IPR000571 GO:0046872
Viun8g01778 329 MobiDBLite consensus disorder prediction 150 329 - -
Viun8g01778 329 FunFam Uncharacterized protein 62 139 - -
Viun8g01778 329 MobiDBLite consensus disorder prediction 104 143 - -
Viun8g01778 329 SUPERFAMILY CCCH zinc finger 68 90 IPR036855 GO:0046872
Viun8g01778 329 Gene3D - 53 140 - -
Viun8g01778 329 SMART c3hfinal6 67 91 IPR000571 GO:0046872
Viun8g01778 329 MobiDBLite consensus disorder prediction 96 329 - -
Viun8g01778 329 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01778 Viun-Chr8 28649257 28652619 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun8g01778 zf-CCCH 2.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01778 K13107 - gmx:100792988 421.009