Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01763 ATGGATACTGTGTTAAGAGGAGAAAGTCATGGTGGAAATGGCTTTCAAATTTATGGTTGTGATGTTATGAACCCTGTTTTGACATCCACAGACACAGATCAATTCTTATTTGGCCACTTCCCTCCTCATCATCATCAACAACAACAACAGGCAAAGAACAACCAAAACCTTACACTGTGTCTGGATGATATGCAAGTTTCATGTAAGAACACGAAAGTGGTGGGAAGGAGAAGAAAGAAACAATGTTCTGTGTCTTGGATCAAAGGACAGTGGAATAAGGAAGAGGACAGGAAATTGATAAGGTTGGTGAAACAACATGGTGATAAAAAATGGGCTGAAATAGCTGAGAAGTTGGAGGGAAGAGTTGGCAAACAATGTCGAGAAAGATGGAACAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGACTGAAGAAGAAGAGAGAATAGTGGTAGACATGCATGCGAGGCTCGGAAATCGATGGTGCGAGATGGCAAAATGCCTTCCAGGAAGATCAGAAAATGCCATAAAGAACCACTGGAATGCCACCAAAAGGAGACAGAATTCAAAGAGAAAGCACAAGAAAACAAAAACATCTAACGGAAAACCACATTCTTCGATACTCGAAGACTACATCAAAAGCAAGACCGTGATCACCACAAACCCTACACCTGTTGTTGTCACTGCCCCAACACCCTCACAGGATTCAAAGGTACCTTTGAATCATGTGTTACCTTTGAATCATGTGTTCTATGAACCTTTCGGTAATGAACCACTCTTGATGCAACAAATTTTCACTGAGAATGTTGAGGCCTCTAAGCACTCTAAGATGTGTCCAACCTCGTATTTGGATCACTGGAACATGAATGTTGATGATGTGGATGAGAGTGATGTTGTGTATTCTCTGCAATACCCAGATAATGTGCACTTCAATGATAGTTTCTTCCCTAGAGAGACTCATCTTCCTTCGGATTTTTATGTGTCTCCCTTGTTCAATGTAGCAGCTGGGTATGGAAATCAGAATCTCAACATAGATTTTCGGCATCAAGGTTGCTCACAAGTAAAAGGAGAGGAGATTTGGTAG 1086 0.4098 MDTVLRGESHGGNGFQIYGCDVMNPVLTSTDTDQFLFGHFPPHHHQQQQQAKNNQNLTLCLDDMQVSCKNTKVVGRRRKKQCSVSWIKGQWNKEEDRKLIRLVKQHGDKKWAEIAEKLEGRVGKQCRERWNNHLRPDIKKDSWTEEEERIVVDMHARLGNRWCEMAKCLPGRSENAIKNHWNATKRRQNSKRKHKKTKTSNGKPHSSILEDYIKSKTVITTNPTPVVVTAPTPSQDSKVPLNHVLPLNHVFYEPFGNEPLLMQQIFTENVEASKHSKMCPTSYLDHWNMNVDDVDESDVVYSLQYPDNVHFNDSFFPRETHLPSDFYVSPLFNVAAGYGNQNLNIDFRHQGCSQVKGEEIW 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01763 361 SUPERFAMILY Homeodomain-like 85 181 IPR009057 -
Viun8g01763 361 CDD SANT 142 185 IPR001005 -
Viun8g01763 361 FunFam Transcriptional activator Myb isoform A 87 140 - -
Viun8g01763 361 ProSiteProfiles Myb-like domain profile. 135 185 IPR001005 -
Viun8g01763 361 SMART sant 139 187 IPR001005 -
Viun8g01763 361 SMART sant 87 136 IPR001005 -
Viun8g01763 361 CDD SANT 91 134 IPR001005 -
Viun8g01763 361 Gene3D - 141 209 - -
Viun8g01763 361 PANTHER MYB PROTEIN-RELATED 81 201 - -
Viun8g01763 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 138 IPR017930 -
Viun8g01763 361 MobiDBLite consensus disorder prediction 183 206 - -
Viun8g01763 361 Gene3D - 87 139 - -
Viun8g01763 361 ProSiteProfiles Myb-like domain profile. 88 134 IPR001005 -
Viun8g01763 361 MobiDBLite consensus disorder prediction 184 201 - -
Viun8g01763 361 Pfam Myb-like DNA-binding domain 91 148 - -
Viun8g01763 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 189 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01763 Viun-Chr8 28574557 28578530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01763 79 336 MYB Transcription Factor Family AT5G11050 42.349 6.66e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun8g01763 Myb_DNA-bind_6 4.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01763 K09422 - vra:106763407 466.077