Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01757 ATGAAGTGGGAAACTTTAGCCCTTTCTCCTACACCTTGTTCTCCAAACTCCAGCACCAATTGGTTGGTGGAAAATAACAGGAGCACAAAATGGACTCCTGAAGAGAACAAACTGTTTGAAAATGCTCTTGCAGTGCATGATAAAGACACTCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCTGGAAAAACAGTAGTTGATGTGATCAAGCAGTACAAGGAACTTGAAGCTGATGTTAGCAATATAGAAGCTGGGTTAATCCCAGTTCCTGGCTATAGCACTGCTACTTCACCCTTCACCTTAGATTGGGTGAACACTCCTGGTTATGATGGTTTCAAAGGAAGTGGCAAGAGATCATCCTCAGTGAGACCTCATGAGCAGGAAAGGAAGAAAGGAGTACCTTGGACTGAAGAGGAACATAAATTGTTTCTTCTGGGTCTGAAGAAGTATGGGAAAGGTGATTGGAGAAATATTTCTCGCAACTTTGTGATCTCTAGAACCCCAACACAAGTGGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGGGCTAGCATACATGACATAACAACGGTGAATCTGACAGAAACCACCACAACTTCTTCAGAAGACACCAACAGATCCACCTCACCACATGTGCTCTCACAGCAGCAGCAGCAGCAAAATTCTACTCCAACTACACCCACAACTCATTTTCAGTGGAGTAATCAATCAAGCACAGGAATGGCAATGACTTTCAACCCTGCTCATGAAAGAGTTTTCATGTCTCCTTATGGTGCTAACTCCTTTGGGGTTAAAATGGAAGCACGGAATCTGCATAACGAGTCTTCTTACTTGGGACCTCAGACACAGAACATGGTTTTCCAAATGCAACAGTCCTCACAACACTAG 918 0.439 MKWETLALSPTPCSPNSSTNWLVENNRSTKWTPEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVVDVIKQYKELEADVSNIEAGLIPVPGYSTATSPFTLDWVNTPGYDGFKGSGKRSSSVRPHEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVISRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTTTSSEDTNRSTSPHVLSQQQQQQNSTPTTPTTHFQWSNQSSTGMAMTFNPAHERVFMSPYGANSFGVKMEARNLHNESSYLGPQTQNMVFQMQQSSQH 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01757 305 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Viun8g01757 305 CDD SANT 30 76 IPR001005 -
Viun8g01757 305 ProSiteProfiles SANT domain profile. 26 76 IPR017884 -
Viun8g01757 305 Gene3D - 23 90 - -
Viun8g01757 305 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Viun8g01757 305 FunFam Transcription factor SRM1 23 90 - -
Viun8g01757 305 Gene3D - 134 184 - -
Viun8g01757 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Viun8g01757 305 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Viun8g01757 305 MobiDBLite consensus disorder prediction 1 21 - -
Viun8g01757 305 CDD SANT 135 180 IPR001005 -
Viun8g01757 305 MobiDBLite consensus disorder prediction 120 134 - -
Viun8g01757 305 SMART sant 27 79 IPR001005 -
Viun8g01757 305 SMART sant 132 182 IPR001005 -
Viun8g01757 305 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Viun8g01757 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Viun8g01757 305 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Viun8g01757 305 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Viun8g01757 305 FunFam transcription factor MYB1R1 134 185 - -
Viun8g01757 305 MobiDBLite consensus disorder prediction 115 134 - -
Viun8g01757 305 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 253 IPR043363 -
Viun8g01757 305 MobiDBLite consensus disorder prediction 206 244 - -
Viun8g01757 305 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01757 Viun-Chr8 28547563 28549776 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun8g01757 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01757 - - gmx:778034 516.538