Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01749 ATGAAGAAAACATCGTCTCCCAAATTTCAGCAATCTAGCCAAAGGAAACAGAATGCTAATCTCCAAGTTCTTGCTACAGTCAATGATGAACAGAGGCATAGTTCTGCACTCAAATATTTCAAGAATGCTGTGAAGAAATGTGCACAAGTTTTTTCATTGTTTCTACTTGGCAAAAGAAAATCAGCTTCATATGTTGGTGGAAATGATGACAGAAAAAATACATCTAAAGTCAGAGGGGTGGCATCATCATCAACTGATTTATCTTCGGAGAGTAACACCAAGAATTCATCAAAATGGAAGTTTTCTTATTCCTACGCTTCATCTAGCACTGCAAGTGGACAACTTGGAATTGGAAACTTCTCTTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCACCAGATAACGAAATTGGACAAGGTGGCTTTGGAACTGTCTACAGGGGAAAGCTAAGTGATGGATCCATAGTTGCGGTAAAGCGTGCCAAGAAGGAAGTAATACACAATCACTTACATGAGTTCAAGAATGAAATATACACCTTGTCTCAAATTGAGCATCGGAATCTGGTGAGGTTGTATGGATATTTGGAACATGGAAATGAGAAGATCATTGTTGTTGAATATGTTGGTAATGGTAACCTTCGAGAACACCTTGATGGGATTCGAGGAGAAGGATTAGAAATGGGGGAGCGTCTAGACATAGCAATTGATGTAGCTCATGGAATAACTTACCTTCATATGTACGCAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCTTAGTGACTGAGAACCTAAGGGCCAAAGTGGCAGATTTTGGTTTTGCACGGTTATCTGATGATCCTACAGCAACTCATATTTCAACTCAAGTAAAAGGAACAGCTGGTTACATGGATCCTGAGTATCTCAGAACATACCAACTCACAGAAAAAAGTGATGTTTACTCCTTTGGTGTTTTGCTTGTTGAAATGGTGACAGGAAGACATCCAATTGAACCAAAGAGACCCCTTGATGAAAGAGTGACAATCAGATGGGCAATGAAGATGCTGAAACAAGGGGATGCTGTATTTGCCATGGATCCTAGGCTGAGAAGAAATCCAGCTTCCATCAAGGCAGTAAAACAGGTTCTCAAGCTAGCTTTCCAATGCGTTGCTCCTTTGAAACAATCACGGCCACCTATGAAGAACTGTGCAGAGGTTCTGTGGGAAATCCGCAAAAGTTTTAGAGATGAAACAAATTCTGATCATCCTTCTCTTCCTTCTCACCATTCTGCAGATTTTCCTCAAAGGGAAAAGAATAAGCATACAGTGTTTGGCATTGAAGATGATGACAGCTATAAATTTGTCTCTGTACCTAATCATATTCATTCATAA 1383 0.3926 MKKTSSPKFQQSSQRKQNANLQVLATVNDEQRHSSALKYFKNAVKKCAQVFSLFLLGKRKSASYVGGNDDRKNTSKVRGVASSSTDLSSESNTKNSSKWKFSYSYASSSTASGQLGIGNFSFEEIYKSTAKFSPDNEIGQGGFGTVYRGKLSDGSIVAVKRAKKEVIHNHLHEFKNEIYTLSQIEHRNLVRLYGYLEHGNEKIIVVEYVGNGNLREHLDGIRGEGLEMGERLDIAIDVAHGITYLHMYADNPIIHRDIKASNILVTENLRAKVADFGFARLSDDPTATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMVTGRHPIEPKRPLDERVTIRWAMKMLKQGDAVFAMDPRLRRNPASIKAVKQVLKLAFQCVAPLKQSRPPMKNCAEVLWEIRKSFRDETNSDHPSLPSHHSADFPQREKNKHTVFGIEDDDSYKFVSVPNHIHS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01749 460 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 109 421 - -
Viun8g01749 460 ProSitePatterns Protein kinases ATP-binding region signature. 138 164 IPR017441 GO:0005524
Viun8g01749 460 Gene3D Transferase(Phosphotransferase) domain 1 209 427 - -
Viun8g01749 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Viun8g01749 460 CDD STKc_IRAK 138 407 - -
Viun8g01749 460 MobiDBLite consensus disorder prediction 77 95 - -
Viun8g01749 460 MobiDBLite consensus disorder prediction 65 95 - -
Viun8g01749 460 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 96 208 - -
Viun8g01749 460 Gene3D Phosphorylase Kinase; domain 1 90 208 - -
Viun8g01749 460 SMART serkin_6 132 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01749 460 SUPERFAMILY Protein kinase-like (PK-like) 113 407 IPR011009 -
Viun8g01749 460 Pfam Protein tyrosine and serine/threonine kinase 135 404 IPR001245 GO:0004672|GO:0006468
Viun8g01749 460 ProSiteProfiles Protein kinase domain profile. 132 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01749 460 MobiDBLite consensus disorder prediction 415 435 - -
Viun8g01749 460 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 209 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01749 Viun-Chr8 28465444 28469255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01749 104 407 Receptor kinase-like Gene Family AT1G79620 44.695 9.95e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Viun8g01749 PK_Tyr_Ser-Thr 1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01749 - - gmx:100811511 791.956