Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01738 ATGGGAGAGGGAGAGAACATAGAAGTGGAAACTGAAGCAGAATCCGAAGCATCATCGTCATGGAACCTCGGAAAACACGCTCAGATAATCGAGCTGTCGGAGAAGTTGTTGGACGGGAACCTCAGCGCCAAGATTGAGGCTGCGAGGGAGATAAGGAAGATGGTTCGGAAATCATCGTCCTCGTCGAAGATACGTGCGAAGCTCGCCGCAGCGGGTGTGATTGAACCCCTCGTGGTGATGCTGTCTTCTTCCAACATCGAAGCTCGCCAATCCTCTCTTCTCGCTCTCCTCAACCTCGCTGTTCGCAATGAACGCAACTTCAGAAAGATAGCTGTAACTTCGTCCGGAGCAAATGTACTAGCATTCACATTCTCATTCTCATTTGTTCCAGCAAGAAACAAGGTCAAAATAGTGACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGAAAAATAGCGGTATACGAGAATTAGCTACAGCTGCAGTCTTGACACTCTCAGCTGCTGCATCCAACAAGCCCATTATTGCTGCTTCTGGAGCAGCACCTTTTCTTGTTCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGCCCTCCATAATCTTTCTACCTTCAATGAGAATTCCATCGAACTTCTTGATCCTAGTGCTGTTTTCCCTCTGATCAACCTTCTTAAAGAGTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCCACAGCACTGCTTGAAATCCTTTCCAACTCTGAAGAAGGGCGAACTGCAATCTCAATTGCAGATGGTGGAATCTTAACCCTAGTTGAGACAGTTGAAGATGGATCACTTGTCAGCACAGAACATGCTGTAGGAGCTCTGCTATCTTTATGCCAAAGCTGCCGAGATAAATACCGAGAACTGATTCTTAAAGAAGGTGCAATTCCGGGTCTGCTACGGCTGACCGTGGAGGGCACGGCTGAAGCTCAAGATAGAGCTCGTGTGCTTCTGGATTTGCTCAGAGATTCTCCCCCAGAAAAAAGACTAACCTCATCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGGGTAGATGGCGCAGATAAAGCTGCTGAAACTGCCAAACAGTTGTTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAAATGCATCCAGCATAGGGCTGCATCTTGCACTCCTTCTATTCCTTCCACTTGA 1218 0.4663 MGEGENIEVETEAESEASSSWNLGKHAQIIELSEKLLDGNLSAKIEAAREIRKMVRKSSSSSKIRAKLAAAGVIEPLVVMLSSSNIEARQSSLLALLNLAVRNERNFRKIAVTSSGANVLAFTFSFSFVPARNKVKIVTDGAMPPLVELLKMKNSGIRELATAAVLTLSAAASNKPIIAASGAAPFLVQILKSGSVQGKVDAVTALHNLSTFNENSIELLDPSAVFPLINLLKECKKYSKFAEKATALLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGALLSLCQSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGADKAAETAKQLLQDMVQRSMEHSMKCIQHRAASCTPSIPST 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01738 405 SUPERFAMILY ARM repeat 34 362 IPR016024 -
Viun8g01738 405 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 141 183 IPR000225 GO:0005515
Viun8g01738 405 SMART arm_5 171 211 IPR000225 GO:0005515
Viun8g01738 405 SMART arm_5 61 101 IPR000225 GO:0005515
Viun8g01738 405 SMART arm_5 255 296 IPR000225 GO:0005515
Viun8g01738 405 SMART arm_5 212 254 IPR000225 GO:0005515
Viun8g01738 405 SMART arm_5 130 170 IPR000225 GO:0005515
Viun8g01738 405 MobiDBLite consensus disorder prediction 1 20 - -
Viun8g01738 405 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 72 116 IPR000225 GO:0005515
Viun8g01738 405 PANTHER U BOX DOMAIN-CONTAINING 28 339 - -
Viun8g01738 405 Gene3D - 120 353 IPR011989 -
Viun8g01738 405 Gene3D - 29 119 IPR011989 -
Viun8g01738 405 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 223 267 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01738 Viun-Chr8 28390826 28395852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01738 27 339 U-box Gene Family AT3G54790 34.395 2.55e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01738 K08332 - gmx:100782472 610.912