Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01733 ATGGGTGCCGTCGTGGAGTGTTACCCGCCGCCGCGTACGGCGGTGCTGTCTCTCAATACGCTGCCGCTGGGCTTCCGTTTTCGTCCCACCGATGAAGAGCTCATTGATTACTACCTGCGCTCGAAGATCAACGGAAACGGGGACGATGTTTGGGTTATCCGTGAGATTGATGTCTGCAAATGGGAGCCTTGGGATTTGCCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGGAAGTATCCCAATGGGCACAGGTTGAACCGAGCTACGAACCATGGGTATTGGAAAGCAACGGGGAAGGATCGAAAGATTAAGTCTGGTTCTGCTTTGATCGGAATGAAGAAGACTCTTGTTTTCTACACGGGTCGTGCACCGAAGGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGGCCTACCCTGAAGGAGCTCGATGGTACCAATCCTGGACAGAATCCATATGTCCTCTGTCGGTTATTCAAGAAACATGATGAGAGTCTTGAAGGTTCAAATGGTGAGGATGTGGAGCGGACTGCTTCGACCCCTATGACTGCCAATCACTCTCCAGATGAAATACAATCTGATTCATCTCTGGATCCAGCATCTTCCTCGCAGATCACTGAGGGTGAAAAGCCGCTAACAGTTATCCATGAGAACTCTGAGGAAGCAATATCCAACATTGTAACTCCACTTGACTCCCATAGTGATGGATGTGGTGCACAAAATCAAATTGTAAAACCAGCTGCAGAGCAGGATCAGGCATTTAACTTTGAGGATTTTTATGACCCAACAAAGCAGCAATTATTAGATGACAAATTATTCTCCCCAGTCCATGCTCATTTCCCACCAGAAATTTACTACCAATCTGAACTTCAGTATGGTACAAATGACAATATGTCCGATTTTTTCGACTCGGTTAACTGGGACGCCATCTCCTATGATACTAGCAGTCTTGAGCTAGGTTCATCCTTCCTCAATGTCAAGGACAATGGATCTGGCAGTGACTCAGATGTGGAAATGGCCAATATGACGAATCTGCAGGCATTACATGGTTATCCTAAGGAGGAAGTTGAGCAGAAGAGCAGCAATGTAGGATTATTTCAGAACATTCCTCAGATGGTTTTCTCAAACGATGGTTCTATGGGCCAGGTGGATGATCCGATCAAGAATATTGGCCAACCAAGAGACTTTGATACGTTTGTTAATGGTGATACTGGAATCAGAATAAGACCTCGTCAAGGACGAAATGAACAGCCAAACATGAATGGAATGGTACTACAATCACAAGGCAATGCACCGAGGAGAATAAGATTACATGTCGACCGACAGTTTGCTTCCGCGGCGAAAGATGAAAGCTTTGCTTCTGCCCCAGAAGACCATAATTCAAAAACCACCATTTCTAGGGAGTGGAATGGTTCAGAAAACCATGCTACCGATGAGAGCTGCAGCAGCAGCAGCTCTAGTGATGTGGATGAAGCAGAGAAGGAATCTGCTGAGTCATGTGATGTTGCAAGTGCAGAATTCATCTCAAAAGAGAGCCGAAGGGGGCATCACAGTTCAAAGGTTTCGTCTAACCGTGGCATGTGGTCTTGTGTTCTTGCAGTTTCTGCAACTGTGTTGGTTTCAGTAACAGTGATTGTTAATATATGGGGTTATGTGAGATCTTAA 1695 0.4608 MGAVVECYPPPRTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGSALIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDESLEGSNGEDVERTASTPMTANHSPDEIQSDSSLDPASSSQITEGEKPLTVIHENSEEAISNIVTPLDSHSDGCGAQNQIVKPAAEQDQAFNFEDFYDPTKQQLLDDKLFSPVHAHFPPEIYYQSELQYGTNDNMSDFFDSVNWDAISYDTSSLELGSSFLNVKDNGSGSDSDVEMANMTNLQALHGYPKEEVEQKSSNVGLFQNIPQMVFSNDGSMGQVDDPIKNIGQPRDFDTFVNGDTGIRIRPRQGRNEQPNMNGMVLQSQGNAPRRIRLHVDRQFASAAKDESFASAPEDHNSKTTISREWNGSENHATDESCSSSSSSDVDEAEKESAESCDVASAEFISKESRRGHHSSKVSSNRGMWSCVLAVSATVLVSVTVIVNIWGYVRS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01733 564 MobiDBLite consensus disorder prediction 457 510 - -
Viun8g01733 564 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Viun8g01733 564 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Viun8g01733 564 SUPERFAMILY NAC domain 14 171 IPR036093 GO:0003677|GO:0006355
Viun8g01733 564 MobiDBLite consensus disorder prediction 175 216 - -
Viun8g01733 564 FunFam Nac domain-containing protein 86 30 174 - -
Viun8g01733 564 MobiDBLite consensus disorder prediction 397 431 - -
Viun8g01733 564 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 250 - -
Viun8g01733 564 MobiDBLite consensus disorder prediction 475 497 - -
Viun8g01733 564 MobiDBLite consensus disorder prediction 182 216 - -
Viun8g01733 564 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01733 Viun-Chr8 28279550 28282676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01733 14 449 NAC Transcription Factor Family AT4G35580 42.953 3.77e-97 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun8g01733 NAM 5.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01733 - - gmx:100778903 833.172