Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01700 ATGAAGTTCCAATTCCGTGCTGTTTCATTTGTTCTGCTAAGCTTCACAGTGTCTCTCTTTGGCCTGATTGTAGCTGACTTGAACTCCGACAGAAAAGCTCTCCTTGAGTTCTTCTCAAATGTTCCTCACGCCCCAAGGTTAAATTGGAGTGAGTCCACTCCAATTTGTACTTCTTGGGCTGGTGTGACTTGCAACCAAAATGAAACTAGTGTCATTAGCATCCATCTTCCAGGGGCAGGTTTCAAGGGCTCCATTCCAGAAAATAGCTTAGGAAAACTAAATTCTCTTAAAATTCTGAGCCTTCACTCCAATGGCCTTAGAGGAAACCTTCCTTCTGACATTCTCTCTATTCCTTCACTCCAATATGTAAACCTGCAGCAAAATAGCTTCTCAGGCCTAATCCCTTCTTCTATCTCCCCTAAACTCATAGCATTAGATATTTCCTCTAACAATTTCTCCGGAAGTATCCCACCTACCTTTCAGAATCTCAGTAGACTAACCTGGTTGTATCTCCAAAACAATTCCCTCTCTGGGGCTATTCCTGACTTCAACTTTCCAAGTCTCAAGTATTTGAATTTGAGCTATAACAACTTGAATGGCTCAATTCCAAAGTCCATCAACAATTATCCGTACACTTCTTTTGCTGGGAACCCTCACTTGTGTGGACCACCTCTCAATAACTGTTCTGCAGTCTCCACTCCATCTTCATCTTCTTCCTCCCTTTCTCCTTCTCCTGTTCATCAACCACTCTCTCCATCAGCAGCTCCCCAAAATAGAAGTGCTACCACTTCAAAGAGTTACTTTGGCCTAGCTTCTATACTTGCTCTGGCAATTGGGGGCTGTGCTTTCCTCTCTCTCTTGGTTTTGATGATGTTTGTATGCTGTTTAAAGAAGAACAAAAGTCAAAGCAGTGGCATACTTACAGGAAAGGCACCGTGTTCTGGAAAGACCGAGGTTTCAAAGAGTTTTGGGAGTGGGGTGCAAGAGGTTGAAAAAAACAGGTTGTTTTTCTTTGAAGGTTGCTCTTACAGCTTTGACCTTGAAGATTTGCTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGTAGCTATGGAACAACATATAGGGCTGCTTTGGAGGATGGAACAGCAGTGGTAGTTAAAAGGTTGAGGGAAGTTCTAGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAGGTTGTAGGAAGAATTGGTCGGCACCCCAATGTTTTGCCCCTTCGAGCTTTTTACTTCTCCAAAGATGAGAAACTTCTAGTATATGACTACATGCCTGGAGGCAGCTTGTTTTCCTTGCTGCATGGGAACAGAGGAATTGGAAGATCTCCATTAGACTGGGATTCAAGAATGAAGATTGCACTTGGAGCTGCTAAGGGACTTGCTTCCATTCACACTGATCACATGGATTCGAAACTTACTCATGGCAACATCAAGTCCTCCAATGTGCTCATAACCAAAGAATGTGATGGCTGCATCACTGATATAGGACTCACTCCTATGATGACCACCCAATCAACCATGTCAAAAGCCAATGGCTACCGTGCTCCCGAAGTAACCGAGTACAGGAGAATCACTCAGAAGTCTGATGTTTACAGCTTTGGAGTGCTCCTTCTTGAAATACTCACTGGAAAGGCTCCAATTGGATATCCTGGCTATGAGGACATGGTTGATCTTCCAAGGTGGGTGAGGTCTGTGGTTCGAGAGGAATGGACTGCTGAAGTTTTTGATGAGGAACTTCTTAGAGGGCAGTATTTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTTGCATGTGTGGCTAAGGTGGCAGATAATAGGCCAACAATGGATGAAACTGTTAGGAACATAGAGGAAATTAGGCTTCCTGAAATGAATAACCGTAACACATCATCTGAGTCTGAATCTAATGTACAAACTCCATGA 1938 0.435 MKFQFRAVSFVLLSFTVSLFGLIVADLNSDRKALLEFFSNVPHAPRLNWSESTPICTSWAGVTCNQNETSVISIHLPGAGFKGSIPENSLGKLNSLKILSLHSNGLRGNLPSDILSIPSLQYVNLQQNSFSGLIPSSISPKLIALDISSNNFSGSIPPTFQNLSRLTWLYLQNNSLSGAIPDFNFPSLKYLNLSYNNLNGSIPKSINNYPYTSFAGNPHLCGPPLNNCSAVSTPSSSSSSLSPSPVHQPLSPSAAPQNRSATTSKSYFGLASILALAIGGCAFLSLLVLMMFVCCLKKNKSQSSGILTGKAPCSGKTEVSKSFGSGVQEVEKNRLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYRAALEDGTAVVVKRLREVLVGKKEFEQQMEVVGRIGRHPNVLPLRAFYFSKDEKLLVYDYMPGGSLFSLLHGNRGIGRSPLDWDSRMKIALGAAKGLASIHTDHMDSKLTHGNIKSSNVLITKECDGCITDIGLTPMMTTQSTMSKANGYRAPEVTEYRRITQKSDVYSFGVLLLEILTGKAPIGYPGYEDMVDLPRWVRSVVREEWTAEVFDEELLRGQYFEEEMVQMLQIALACVAKVADNRPTMDETVRNIEEIRLPEMNNRNTSSESESNVQTP 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01700 645 FunFam pollen receptor-like kinase 1 320 427 - -
Viun8g01700 645 MobiDBLite consensus disorder prediction 627 645 - -
Viun8g01700 645 ProSiteProfiles Protein kinase domain profile. 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01700 645 SUPERFAMILY Protein kinase-like (PK-like) 356 620 IPR011009 -
Viun8g01700 645 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Viun8g01700 645 FunFam Probable inactive receptor kinase RLK902 27 184 - -
Viun8g01700 645 Gene3D Phosphorylase Kinase; domain 1 318 427 - -
Viun8g01700 645 Gene3D Ribonuclease Inhibitor 141 230 IPR032675 -
Viun8g01700 645 MobiDBLite consensus disorder prediction 234 259 - -
Viun8g01700 645 PANTHER OS05G0588300 PROTEIN 11 637 - -
Viun8g01700 645 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 428 636 - -
Viun8g01700 645 ProSitePatterns Protein kinases ATP-binding region signature. 358 389 IPR017441 GO:0005524
Viun8g01700 645 SUPERFAMILY L domain-like 40 226 - -
Viun8g01700 645 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515
Viun8g01700 645 MobiDBLite consensus disorder prediction 625 645 - -
Viun8g01700 645 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Viun8g01700 645 Pfam Protein tyrosine and serine/threonine kinase 356 620 IPR001245 GO:0004672|GO:0006468
Viun8g01700 645 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Viun8g01700 645 Gene3D Transferase(Phosphotransferase) domain 1 428 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01700 Viun-Chr8 27994095 27998281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01700 8 644 Receptor kinase-like Gene Family AT5G58300 56.143 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun8g01700 PK_Tyr_Ser-Thr 2.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01700 - - vum:124839146 1188.71