Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01688 ATGGGTAGGCGAAAAAACAAACCGCATCGAGCAGGTGGGATAATACTAGACCCAGATGCTTCTGCTGAGACAGAATTGAATAAACAAAATGTTGTAGAAGGAGGGGAAGAAGCAAAAGATAGTTATGGTGACATTGATAAGCCTTATTTTGTGGAGGTTGCTCGGTTGGATTGGTTGTCGGGTCAACACCTTGATATTTCTGAGATTGTTTTGAGGGATTTAAACTTGAGTGAAGGTTTTTCTGGTTTTGAATTGGCTGAGGATTTTTGTCGGGATCAGCAGTACTTGTTGAGATTTCGAGTATGTAATGTCAGTAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCATCTAGAGTTTGCGAGAAGAGTTACCGTTGACCATGTGGAAACTTATACAGTGTTGTTATCTGGTATTTTTGACGGACCTGATGAAGGTGTTACTGGTCTTCTTCACTTGGCAAGTTTGAAGTTTGTTACACTGAGGCCAGTTCTTGGGATTAGGCTTTCGGAGGAAATTTCCTCCCTCAGGGTAAGGGTTGAGGTACTAAAGAACGCCTTCAATGCATGTGAGTCGCTTCTTGATACTTCTAGACAACTATGGAAAAAGAGTATGGTAAATGTAATGTCTTGGTTGCGTCCAGAAATAATGACTTCAGAAGTTAGGTACGGGTTTAGCTGTATGAAAATGGATGGTGATCCACAGACAGAGATGGTAGATGACACTTGCAAAGCAAGGAAACATGCAAGGTTTGATCCTGCAGGTTTATATGAAGCCATAAAGCCTTCAAAAGCAGAGCCAATGCTTGAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAAAGAGAGAAAGCAGTGGAAGAAAGTCAGGGTGAAACAGAAAGAAATCAGTTTCATTCTCCACTATGCATACCTGTGGATTTTCTGGACGCCAGTTCTCAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTTCTTGCATCTTTACTCATCGTAGATCAGCATCTGGAAGTGACATATTATTTGATTTAGATCCACAAATTAATGTGGACCAAAAAGTCACTTTGAAGAGAGTTAAAAGAGATCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTGTGGGTTCAGTGTGACATTTGCGATGCTTGGCAACATGCGGATTGTGTTGGTTATTCACCGAAAGGAAAATATTTGAAATCAAAACACGGATCTGAAGGCAAGGCATATAAAACTACAGTATCTGTGAGGGATGGAGAATATGTATGTCATATGTGCTCTGAACTAATTCAAGCTACTGAATCTCCTATTGCCTCTGGCGCCACACTCATTGTCTGCCCTGCACCTATTTTGCCCCAGTGGCATGATGAAATTATACGCCATACGCATCAGGGCTCCTTGAAAACTTGTGTCTACGAAGGTGTGCGAGAAACAACTTTTTCCAATACGTCTGTTATGGATATCAGTGATCTTGCTAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATCTGTCTCATGATTCTGATAGGCATGAAGGTGATCGGCACTTTCTGAGGTTTCAAAAAAGGTACCCTGTCATCCCAACTCTTCTTACGAGAATATATTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAAAGTAATACTACAGCTTCTACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGATGGTGCATTACTGGTACCCCAATTCAGCGAAAACTTGATGACTTATATGGACTTCTAAGGTTCCTTGTGGCCAGTCCTTTTGATAAATACAGGTGGTGGACTGATGTTATTAGAGATCCTTATGAGAAGGGAGATGTGGGAGCTATGGAGTTTACACACAAAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAAAACATGTTGCTGATGAATTGGACCTTCCATCCCAAGAGGAGTGTCTCTCTTGGCTTACTCTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCTCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGGCCCAGATGCTATCTCTTTGCAAAGTTCCTCTGATCCTTTAATCACTCACAACGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCCCTACAGCAGACACCAATGACTATGGAAGAAATACTAATGGTTCTTATAAGCAAGACCAAAATCGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTTTGAATGCACTTGCAGCTATTGCTGCAATACAAAAAGATTTTTCTCAAGCTACATCACTGTACGGTGAAGCTCTTGCTTTGGCTGGAGAGCATGCTGAAGATTTTCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTTCCACTTGCTTCAAACTTTGCTTTAACATTGGCATCCAAAGGAAAACAATTCTCTGAAAATTCTGAATTTAAGATGACCAAAAGGCATTTAATTGTAAAGGTTGACAGTTGTCATGTGAAGAGGCAAAGAATAAGTGGCTGTGATTACATAAATGCAACCGTGCCGTCTGCAGAACCATCAAATGTTAGCCTTTTGGAAAATGACACAAAGGAGGATCAGGAATTTGATAATTTATCAGCCAGTTCTGTCAAATCTCTGATAGCAGAATGTGAAGATTCGAAACAGAAATTCTTGTCTGTCTTCAGTTCAAAGCTATCTGCAGCCCAACAGGAGTTTCAAAGTTCTTACATTCAGGTCAGTAATGCTTATCGTGACAATCGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAGCAGAGCAAAGATTTCTCCACTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAGCAATTCAAAGTCATCAAGAATAACTGCTCGTTTCCGAAGCATAAGCTCTCTAAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATCAGACTATGGAAAAACCAAAAGAAGAAGATATTGAACGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTGTGATGGTCCCCCATGTGTTTTGTGCGAGCTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTCGTTCTTAAGAATGATCGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCACTAAATCATTTTCTCTCAAAGCTATCACAATCTAGTAACAGTTCTACAACATCTGATATCGGTCATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCAAGATCAGCATCTGAAATGGAGCTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTAGATTAGGAAGGGACTCTGTCTCGGCTGCTACCAAGGATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCTGTTTCCCGTCTGCACCTAAGGACAAGTGAAGATGATAAATCTCTCGATGCTTTAGGTGAAAATGAATTAACTGCTGCTAGCTCCAACTTTTCCCACGAAAAGTTTATGTCATTGACCATGTTGTCCCAGACGAAAGGAAAACTCCGCTACTTAAAGGGTTTAGTTCAATCCAAGCAAAAAATGCAATTTGAAAGTCCAAACGGCTCTTCAATCTCAGGAGAAACAACTGCAATGTCAAACTCTACAGAAGAGAAGGCTGCACTTATAGCTAAAACTGATGATGAAACATGCCCGGTCTGCCAAGAAAAGCTAGGCAATCAGAAGATGGTTTTTCCATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGCTTCATAATTGGGTGATGTGCCCTACATGTCGGCAGCATACTGATTTTGGAAACATTGCCTATGCAGTTGATTCACAGAATGAATCTTCCAATCTTTCAGAGCTGCATACAAACGACAGCAGTGAAATATGTGAAGCATCCATTAGTGTCAAAGGATCATATGGGACTAAGATTGAAGCAGTCACAAGAAGAATATTGTGGGTAAAGGCTAATGATCATAATGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTACTGCCAATAACATTACCTTCATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTCAGAGGAAAACAGAATGATACAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTGCTGCTTTTAATCCAACATGGTGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTTCTTGTAGAGCCATTGCTGAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGGATTGGACAAAAAAACAAGACCCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTCTATACAAATTGAACAGAAGCAGGAGCAATCATTCATTCATCAGTGGAAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGGGCACCACTTACAATGCCAGAAAGTGAAGAAAATCATAGCACAAACACAAATCTTAGACACTTGCCACCATCAGTAGCCGCTGCTATAGCTGCTGAGAAGAGACTTAATGAACAAAGGACATGA 5007 0.405 MGRRKNKPHRAGGIILDPDASAETELNKQNVVEGGEEAKDSYGDIDKPYFVEVARLDWLSGQHLDISEIVLRDLNLSEGFSGFELAEDFCRDQQYLLRFRVCNVSNVLGRIKLGHWPVLPYTDIHLEFARRVTVDHVETYTVLLSGIFDGPDEGVTGLLHLASLKFVTLRPVLGIRLSEEISSLRVRVEVLKNAFNACESLLDTSRQLWKKSMVNVMSWLRPEIMTSEVRYGFSCMKMDGDPQTEMVDDTCKARKHARFDPAGLYEAIKPSKAEPMLEDDIPELLPKLRPYQRRAAFWMVEREKAVEESQGETERNQFHSPLCIPVDFLDASSQMFFNPFSGNISLYPETSSPYVFGGILADEMGLGKTVELLSCIFTHRRSASGSDILFDLDPQINVDQKVTLKRVKRDRVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKYLKSKHGSEGKAYKTTVSVRDGEYVCHMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHQGSLKTCVYEGVRETTFSNTSVMDISDLASADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTASTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDKYRWWTDVIRDPYEKGDVGAMEFTHKVFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKGPDAISLQSSSDPLITHNEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATSLYGEALALAGEHAEDFRLDPLLNIHIHHNLAEILPLASNFALTLASKGKQFSENSEFKMTKRHLIVKVDSCHVKRQRISGCDYINATVPSAEPSNVSLLENDTKEDQEFDNLSASSVKSLIAECEDSKQKFLSVFSSKLSAAQQEFQSSYIQVSNAYRDNRTDQNTFWWLEALHHAEQSKDFSTELIRKIEEAISGTSSNSKSSRITARFRSISSLKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPNCDGPPCVLCELDELFQDYEARLFVLKNDRGGIISSAEEAVDFQKKNFALNHFLSKLSQSSNSSTTSDIGHEESKKRNVGQRVVVSRSASEMELILGVIKNYCKARLGRDSVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRTSEDDKSLDALGENELTAASSNFSHEKFMSLTMLSQTKGKLRYLKGLVQSKQKMQFESPNGSSISGETTAMSNSTEEKAALIAKTDDETCPVCQEKLGNQKMVFPCGHVTCCKCLFAMTEKRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDSQNESSNLSELHTNDSSEICEASISVKGSYGTKIEAVTRRILWVKANDHNAKVLVFSSWNDVLDVLEHAFTANNITFIRMKGGRKAHVAISQFRGKQNDTKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESLYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESEENHSTNTNLRHLPPSVAAAIAAEKRLNEQRT 1668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01688 1668 CDD DEXQc_SHPRH 288 687 - -
Viun8g01688 1668 ProSiteProfiles Zinc finger RING-type profile. 1355 1403 IPR001841 -
Viun8g01688 1668 Pfam Zinc finger, C3HC4 type (RING finger) 1355 1402 IPR018957 GO:0046872
Viun8g01688 1668 SUPERFAMILY FYVE/PHD zinc finger 410 482 IPR011011 -
Viun8g01688 1668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1339 1423 IPR013083 -
Viun8g01688 1668 Gene3D - 1424 1656 IPR027417 -
Viun8g01688 1668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 684 IPR027417 -
Viun8g01688 1668 Pfam Helicase conserved C-terminal domain 1450 1572 IPR001650 -
Viun8g01688 1668 CDD SF2_C_SNF 1446 1583 - -
Viun8g01688 1668 Gene3D - 344 396 IPR038718 -
Viun8g01688 1668 CDD PHD_TCF19_like 415 457 - -
Viun8g01688 1668 Pfam SNF2-related domain 291 783 IPR000330 GO:0005524|GO:0140658
Viun8g01688 1668 SMART PHD_3 413 481 IPR001965 -
Viun8g01688 1668 Coils Coil 1066 1086 - -
Viun8g01688 1668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 480 IPR013083 -
Viun8g01688 1668 MobiDBLite consensus disorder prediction 1 21 - -
Viun8g01688 1668 SUPERFAMILY RING/U-box 1350 1407 - -
Viun8g01688 1668 SMART ring_2 1355 1402 IPR001841 -
Viun8g01688 1668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1452 1623 IPR001650 -
Viun8g01688 1668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 1623 IPR027417 -
Viun8g01688 1668 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 43 1667 - -
Viun8g01688 1668 SMART helicmild6 1480 1572 IPR001650 -
Viun8g01688 1668 SMART ultradead3 284 657 IPR014001 -
Viun8g01688 1668 ProSitePatterns Zinc finger PHD-type signature. 414 480 IPR019786 -
Viun8g01688 1668 Gene3D - 481 708 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01688 Viun-Chr8 27883597 27901519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01688 488 781 RAD5 or RAD16-like Gene Family AT5G22750 31.773 4.63e-35 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun8g01688 SNF2_N 7.1e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01688 K15710 - gmx:100776659 2927.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01688 8 27883597 27901519 Viun8g01688 8 27883597 27901519 ECH