Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01685 ATGGAAGCATATCCAAACGCGGCCTCCATGCTGAGAAGCAGAACCATAATACCTCCTCCTCCACCGTTACTCGCCCTCAGTAAAAGGCTTCCGTCACCGTCACCGTCACCGTCACAGTCACCGTTACTGTCACCCTCCGTTACCCCCTCGGAACCCACACTATTGTGTTCAGGAACCCCGAAACCCTTGCTCCACCGTTTTTCTCTCTTCTCCAATTCTCACACTCTTCAAACCATGACGCTCTCCAAGTGCTTCTCTCACATTGGGCCCACCGTCCCCATTCCGGACCCACCCGGATCCGAACCCCAACCCGATTCCCCTCTCGTCGTGGTTTCCTTCTACAAATTCGCGGATTTTCCCGATCATGCTCTCATGCGAAACCCCTTGAAGCAACTCTGTCAACGCCTGCGTGTTTCAGGTGGAATTATTCTTGCACCTGAAGGGATCAATGGCAGCATCTGTGGGACTCGGGAGTCAGTTGAGGACGTTCTGGCATTTGTGGAAGGTGATGATCGATTAAAGGGGCTTAGGCGAGTGGAATCATCTGTCAGTCCTGAGGAGGAGGCCATCCATCATGGTCATAGTGCTGCTTCTCCTCTTGCTGCTGGGGAAGATGCGCCCTTCCGTTGGGATCATGTGAGGGTCAAGTTGAAGAAAGAGATTGTTACTCTTGGAATGCCTACTGTATCACCAATTGAAAAGGTTGGAAAGTATGTTGGCCCAGAAGAGTGGAATGCTTTGATCAATGAGCCAGATACAGTGGTTATTGATGTGCGAAATAACTATGAAACCAGAATAGGAAAGTTTAAAGGAGCAGTTGATCCATGTACTACATCATTTCGTGAATTCCCGTCTTGGGTAGAGGAGCATTTCCAGCTTAGCGAAACAGATGATAGTGAGAATCCAAAACTTGAGTTAAACAATTCAGTCCAACCTGCTGAAAAAGAAATGGAGAATCAAAAACAACAAATGCCACGTGTTGCAATGTATTGCACTGGAGGTATTCGTTGTGAGAAAGCTACAAGTCTACTTCTCAGCAAAGGTTTCAAAGAGGTTTATCACCTGGAAGGTGGAATTCTAAAATATCTCGAAGAGGTTCCAGAAACAGAAAGCCTCTGGGAAGGGGAGTGCTTTGTTTTCGACAAACGAGTCTCTGTGGAGCATGGCTTGGTGCCAGGAAATTTCAAACTCTGCTATGGCTGTAAACAGCCTGTGAGTGATGCTGACATGGAGGCCCCAGAATTTGAATATGGAGTTTCCTGTCCTCACTGTTTTGCACTGAAATCTGATGAAGAGAAGGAGAGAGCTCGAGCTCGACAAAGACAATTTGAGAGATGGGGAATCATAGGTGGTCCAGACAAGGGTCGCCGCCCAACTACTCAAGAACCGGAAAGTGCTAGCAGGAATCCAAACCAGCTTTCACGTTCTATTTAA 1434 0.4777 MEAYPNAASMLRSRTIIPPPPPLLALSKRLPSPSPSPSQSPLLSPSVTPSEPTLLCSGTPKPLLHRFSLFSNSHTLQTMTLSKCFSHIGPTVPIPDPPGSEPQPDSPLVVVSFYKFADFPDHALMRNPLKQLCQRLRVSGGIILAPEGINGSICGTRESVEDVLAFVEGDDRLKGLRRVESSVSPEEEAIHHGHSAASPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPIEKVGKYVGPEEWNALINEPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEEHFQLSETDDSENPKLELNNSVQPAEKEMENQKQQMPRVAMYCTGGIRCEKATSLLLSKGFKEVYHLEGGILKYLEEVPETESLWEGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMEAPEFEYGVSCPHCFALKSDEEKERARARQRQFERWGIIGGPDKGRRPTTQEPESASRNPNQLSRSI 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01685 477 Hamap tRNA uridine(34) hydroxylase [trhO]. 106 408 IPR020936 -
Viun8g01685 477 SMART rhod_4 239 368 IPR001763 -
Viun8g01685 477 Pfam UPF0176 acylphosphatase like domain 109 221 IPR040503 -
Viun8g01685 477 Gene3D - 100 222 - -
Viun8g01685 477 ProSiteProfiles Rhodanese domain profile. 249 371 IPR001763 -
Viun8g01685 477 Gene3D - 223 404 IPR036873 -
Viun8g01685 477 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 218 397 IPR036873 -
Viun8g01685 477 Coils Coil 303 323 - -
Viun8g01685 477 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 103 454 IPR020936 -
Viun8g01685 477 MobiDBLite consensus disorder prediction 462 477 - -
Viun8g01685 477 MobiDBLite consensus disorder prediction 436 477 - -
Viun8g01685 477 Pfam Rhodanese-like domain 242 364 IPR001763 -
Viun8g01685 477 CDD RHOD_YceA 236 364 - -
Viun8g01685 477 MobiDBLite consensus disorder prediction 22 54 - -
Viun8g01685 477 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01685 Viun-Chr8 27877802 27881950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01685 108 477 Sulfurtransferasese or Rhodanese AT2G40760 74.194 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01685 - - gmx:100784854 758.829