Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01672 ATGGAACTTTATGATAATGATTTCTTGGAGGAATCAATGGGTCTAAGAAGAGAACCATGGGATACCAATCCATGTTCACAAGAAAACCAGCTTTTTTCTAATGCTTGGGGTTTTGATTGTTTTGATCAAAACCAAGCTTTTCCTTCAAATTCTTTCTCTTTTCAAGAAGTGCCTCAGAGTTACAACTTCGACTATGCCTTCAATGAAATCTATAGTTCCTTGTTTGATGAATTTTCTGCACCCCAGATTGTAGATTCATCTTATAACACCCTTGAGGCTTCACATAGCATCCCTTCATTTGTTCCTCATGAAGATTTTCCATTGTCTTTGATGGAAGAAGAAGAAGATCCGGGTTTGCTTGGGGAAGAGCTTCATTGTTTGGACCTTCAAGCCTCATGCAAAATGGAGCCAAGCCATTCCCCTGAAATGCCTGTTTTCAACACAGATTCATGTGTGGAGAGAAAGAATAGGGCAAAGAAGCTTCAGGGGCAGCCTTCCAAGAACCTAATGGCAGAGAGAAGAAGAAGAAAGAGATTAAACGACAGACTCTCCATGCTAAGGTCAATTGTCCCAAAGATAAGTAAGATGGACAGAACCGCTATTCTTGGAGACACTATTGATTACATGAAAGAGCTCTTGGAAAAGATTAACACTTTGAAGCAAGAAATAGAACTGGATTCCAACACTGCTAGCATTTTCAAGGATTTCAAACCAGATGAAATCTTAGTGAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGAAATGGCAATACAAGGGTGGAGATCTGCTGTGCAGGGAAGCCAGGCATGTTGCTGTCCACAGTAAACACATTGGAAACATTAGGCATGGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGTTCAGAGGAAGTGCAGCAGAAGAAAATTCTGAGTGCAGAAGATATAAAACAAGCACTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 999 0.4014 MELYDNDFLEESMGLRREPWDTNPCSQENQLFSNAWGFDCFDQNQAFPSNSFSFQEVPQSYNFDYAFNEIYSSLFDEFSAPQIVDSSYNTLEASHSIPSFVPHEDFPLSLMEEEEDPGLLGEELHCLDLQASCKMEPSHSPEMPVFNTDSCVERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINTLKQEIELDSNTASIFKDFKPDEILVRNSPKFDVERRNGNTRVEICCAGKPGMLLSTVNTLETLGMEIQQCVISCFNDFTVQASCSEEVQQKKILSAEDIKQALFRSAGYGGRCL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01672 332 Gene3D - 152 228 IPR036638 GO:0046983
Viun8g01672 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 29 327 - -
Viun8g01672 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 225 IPR036638 GO:0046983
Viun8g01672 332 SMART finulus 169 218 IPR011598 GO:0046983
Viun8g01672 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Viun8g01672 332 Coils Coil 209 229 - -
Viun8g01672 332 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01672 Viun-Chr8 27662020 27664139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01672 154 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.556 6.29e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g01672 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01672 - - vra:106764382 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01672 8 27662020 27664139 Viun8g01672 8 27662020 27664139 ECH