Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01644 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGATAATTCGACTAGTAGGCAAGTGACGTTCTCGAAACGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATTTTCTCCAGCACCGGAAAACTTTACGATTTTGCCAGCTCCAGCATGAAATCAGTAATTGACCGATACAACAAATCAAAAGAAGAAAATTGTCAACTTGGGAGTTCGGCCTCCGAAATTAAGAGTATTGATGAATTAAGACACCACAATTCTCAAGTTCAAAGAAAAAAAAAACTTCATTATTTTGGAGCAACAATTCAAATTAGCAAATTGATTTGGAGCACTTCCACCCTTTTCAAGTTCGGGATTCAGTATACCATTACAAACTCTTTGAAGGGTAGAATGCAACAAATTATTCTAAACTCTATGAACACCTTCCTTGAGAATCCAGTACCCAGTATGTATGCTAAAAATAAAAGCAAGAACATACATAGTAGGACGTCTCAATTCTTGGTTGACATGATTATAAACCAAAAATGTGAAATATTTTACCACTTTTCTCTTAAAACATCCATATTGGCTAAAGCATAA 609 0.3727 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDRYNKSKEENCQLGSSASEIKSIDELRHHNSQVQRKKKLHYFGATIQISKLIWSTSTLFKFGIQYTITNSLKGRMQQIILNSMNTFLENPVPSMYAKNKSKNIHSRTSQFLVDMIINQKCEIFYHFSLKTSILAKA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01644 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun8g01644 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun8g01644 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun8g01644 202 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Viun8g01644 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun8g01644 202 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Viun8g01644 202 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Viun8g01644 202 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Viun8g01644 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun8g01644 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun8g01644 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun8g01644 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01644 Viun-Chr8 27427824 27436744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01644 1 87 MADS-box Gene Family AT4G37940 85.057 2.49e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun8g01644 SRF-TF 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01644 K09264 - gmx:100778970 166.007