Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01641 ATGGCATCACCAACGGTGAAGCTCTATGTGGAAGAAGATCAAGTGGTTATGGACAATGGTATAGTGCAAGTGTATTTATCCAACCCTGGAGGATTTGTTACCAGAATTCAATATAATGGCATTGATAATCTGCTTGAAACTCGTAACAAGATTGGAGATAGAGGGTATTGGGACGTTGTTTGGAGTGTAGCTGGAAGTACAGGAACCACCGGAACATTTGAACGGATTGTGGGAACAAGTTTTAGTGTTATAATGAAAAATGATAAACAGGTTGAAATCTCATTCACAAGTAAGTGGGATCCATCTCTCAAAGGAGAGAAAGCACCTCTTAATATTGACAAGAGGTATGTGATGCTTTGTAATTCCTCAGGATTCTACTCCTACACCATCTTTGAACACTTACAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGACTGTTTACAAGCTTAGTAAAGATAAGTTTCATTACATGGTGGTGTCTGATAATAGACAAAGATTTATGCCTCTCCCTGATGACAGATTACCTGGAAGAGGAGAAGAACTTGTTCCACCAGAAGCAGTTTTGCTTGTTAATCCTTTGGAGCCAGAGTTTAAGGGAGAGGTGGATGACAAGTACCAATACTCAAGTGAGAACAAAGATCTTATGGTTCATGGATGGATAAGTTCTCAATCTCAAACCGATCCATTTGTAGGGTTTTGGGTAATCATACCAAGCAATGAGTTTCGATCAGGTGGCCCAGTAAAACAGAATCTTACTTCCCATGTCGGCCCAATAAGCCTGGCTATGTTTCTGAGTGCTCATTACGCAGGAGAAGATATAGTTTTGAAACTGCAACCAAAGGAGCCATGGAAGAAAGTTTTTGGGCCAACTTTTGTTTATCTCAACACTTCATTAGATGGTGATGACCCCAAAGTGCTATGGGAAGATGCTAAAGATAAGACGAAGGCAGAAATTCAAAGTTGGCCCTACGATTTTCCAGCCTCGGAAGATTTTCAGAAGTCTAGCCAACGAGGCAGTGTCTGTGGCACATTACTAGTCCAAGACAGGTTTTTGAGTGATGAGTACATCATAGCAGAAGGCGCTTATATAGGAGTGGCAGCACCAGGAGAAGCTGGATCATGGCAAAGAGAATGCAAGGGATACCAATTTTGGAGCAAAGCAAACGAGAAAGGATACTTCTCAATCGAGAATATACGCAGTGGGGATTATAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAGCAATGTTCTCCTCACCATTACACCAGGTTGTGAAATTGATGTTGGTGAGATTGTTTTTGAGGCTCCAAGAGATGGCCCAACATTATGGGAGATAGGCATTCCAGATCGTTCTGCTGCTGAATTCTATGTTCCTGATCCCAATCCCAACTACATCAACAAGCTTTTTGTTCATCATCCAGACAAGTATAGGCAATATGGGTTGTGGGAAAGATATGCAGAATTATACCCAAATGAAGATTTAATTTACACTGTGGGTGTAAGTGATTATGCAAAAGATTGGTTCTTTGCACAGGTCACAAGAAAAAAAGAAGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTGGATGACACAGAGGCAAGTAAAATCTACAAACTGCGGTTGGCACTTGCAAGTGCAAATGTGTCAGAATTACAGGTTAGAGTGAATGATCCAGAACAAGATCCTCCTCTGTTTACTACAGGGGTGATTGGAAAGGACTTTGCAATAGCTAGACATGGCATTCATGGACTCTATTGGCTATTCAACATTGATGTGCCTGGTTTTCTGCTAGAGAAAGGTGATAACACTGTGTTTTTAACTCAAACTGTGGCAACTGGTCCATTGGCTCGCTTTCAGGGAATAATGTATGATTATATACGCCTAGAAGGTCCTAAACCTATTTCTGCTATAAAAGAGTATTAA 1953 0.4107 MASPTVKLYVEEDQVVMDNGIVQVYLSNPGGFVTRIQYNGIDNLLETRNKIGDRGYWDVVWSVAGSTGTTGTFERIVGTSFSVIMKNDKQVEISFTSKWDPSLKGEKAPLNIDKRYVMLCNSSGFYSYTIFEHLQEWPAFNIPQIRTVYKLSKDKFHYMVVSDNRQRFMPLPDDRLPGRGEELVPPEAVLLVNPLEPEFKGEVDDKYQYSSENKDLMVHGWISSQSQTDPFVGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPKEPWKKVFGPTFVYLNTSLDGDDPKVLWEDAKDKTKAEIQSWPYDFPASEDFQKSSQRGSVCGTLLVQDRFLSDEYIIAEGAYIGVAAPGEAGSWQRECKGYQFWSKANEKGYFSIENIRSGDYNLYAWVPGFIGEYWSNVLLTITPGCEIDVGEIVFEAPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLFVHHPDKYRQYGLWERYAELYPNEDLIYTVGVSDYAKDWFFAQVTRKKEDGSYQGTTWQIKFNLDDTEASKIYKLRLALASANVSELQVRVNDPEQDPPLFTTGVIGKDFAIARHGIHGLYWLFNIDVPGFLLEKGDNTVFLTQTVATGPLARFQGIMYDYIRLEGPKPISAIKEY 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01641 650 CDD RGL4_C 449 639 - -
Viun8g01641 650 Pfam Rhamnogalacturonate lyase family 5 203 IPR010325 -
Viun8g01641 650 SUPERFAMILY Starch-binding domain-like 337 434 IPR013784 GO:0030246
Viun8g01641 650 Gene3D - 335 433 - -
Viun8g01641 650 Gene3D - 445 639 - -
Viun8g01641 650 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 642 - -
Viun8g01641 650 FunFam Rhamnogalacturonate lyase B 335 434 - -
Viun8g01641 650 CDD RGL4_M 338 437 IPR029413 -
Viun8g01641 650 Gene3D - 7 280 IPR014718 GO:0030246
Viun8g01641 650 SUPERFAMILY Galactose-binding domain-like 444 639 IPR008979 -
Viun8g01641 650 SUPERFAMILY Galactose mutarotase-like 15 299 IPR011013 GO:0003824|GO:0005975|GO:0030246
Viun8g01641 650 Pfam Polysaccharide lyase family 4, domain III 447 638 IPR029411 -
Viun8g01641 650 CDD RGL4_N 14 306 - -
Viun8g01641 650 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01641 Viun-Chr8 27355916 27362573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01641 1 641 Polysaccharide Lyase AT1G09890 61.994 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01641 K18195 - gmx:100815677 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01641 8 27355916 27362573 Viun8g01641 8 27355916 27362573 ECH