Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01632 ATGGAGCCACCAGCAATGTACGGACACTCCCAGCCACTGAACATGCCTCCGCAGATCTCCGCCGCCGAAAGCGGCGACGGCTCCGGCCCAGACCCCGCCCTCGACGCCCACCACCACATTCACTACGAACCTCACGCGCTCGAAGACGGTGCTGCCGGTGCCATGGTCGTCGTCGAGGATGTCACTTCCGATGCGGTCTACGTCTCCGGCGGTGGAGGGCCCGAAGAGTCTAGTCAGCTTACGCTGTCGTTTCGTGGCCAAGTTTACGTCTTCGATGCTGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATGTGAACTGTCTTCGAGTGGTTCGCCATGTGTGGATGTGGTGCCTCAACAGAATCAGAGGGGTTCAATGGAATATCCTGCAAGATGTAGTCTACCACAGCGAGCTGCGTCGTTAGATAGGTTCAGGAAGAAGAGGAAAGAGCGATGTTTTGATAAAAAAGTGAGATATGGTGTACGGCAAGAAGTTGCGCTCAGAATGCACCGTAATAAGGGGCAATTCACTTCTTCTAAGAAACAAGATGGAGCTAATAGTTATGGTACAGATCAAGATTCAGGACAGGATGATAGTCAATCAGAAACCTCATGCACACATTGTGGCACGAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCGTCTGGTCCAAGGTCACTTTGCAATGCTTGTGGCCTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCGAAGAGAAATCATGAACAGTCTCTTGTAGCAGTTGAGCAGGTCGATGATGGTAACGACTCAGATTGTCGGACTGCCGCCAACCCTGCGCTAAACAATCTGGCTGCTGCATACTCAGAGCATGATAATCCAGCTTTGGTAGCTGATCGTAAAGTTTTCCAGTCCCAGAAAATGCTCCACTAG 933 0.5155 MEPPAMYGHSQPLNMPPQISAAESGDGSGPDPALDAHHHIHYEPHALEDGAAGAMVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSSGSPCVDVVPQQNQRGSMEYPARCSLPQRAASLDRFRKKRKERCFDKKVRYGVRQEVALRMHRNKGQFTSSKKQDGANSYGTDQDSGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHEQSLVAVEQVDDGNDSDCRTAANPALNNLAAAYSEHDNPALVADRKVFQSQKMLH 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01632 310 ProSiteProfiles GATA-type zinc finger domain profile. 204 263 IPR000679 GO:0006355|GO:0043565
Viun8g01632 310 PANTHER GATA TRANSCRIPTION FACTOR 28 9 275 IPR045280 GO:0006355
Viun8g01632 310 Pfam tify domain 74 107 IPR010399 -
Viun8g01632 310 Pfam CCT motif 142 184 IPR010402 GO:0005515
Viun8g01632 310 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Viun8g01632 310 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
Viun8g01632 310 ProSiteProfiles CCT domain profile. 142 184 IPR010402 GO:0005515
Viun8g01632 310 MobiDBLite consensus disorder prediction 1 33 - -
Viun8g01632 310 MobiDBLite consensus disorder prediction 183 223 - -
Viun8g01632 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 260 - -
Viun8g01632 310 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Viun8g01632 310 CDD ZnF_GATA 209 257 IPR000679 GO:0006355|GO:0043565
Viun8g01632 310 Gene3D - 200 259 IPR013088 GO:0006355|GO:0008270
Viun8g01632 310 MobiDBLite consensus disorder prediction 175 228 - -
Viun8g01632 310 Pfam GATA zinc finger 210 245 IPR000679 GO:0006355|GO:0043565
Viun8g01632 310 SMART tify_2 73 108 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01632 Viun-Chr8 27239853 27244173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01632 74 299 Tify Gene Family AT4G24470 63.090 1.74e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun8g01632 CCT 1.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01632 - - pvu:PHAVU_008G182900g 577.785