Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01605 ATGGGTGCTGCAACTTCCTCCTCCCCATTCCACACTCTCACCAGATTCTTCTGCATCTTCACCACCACCCTTACTCTTCTCACTCCTTTCATCCACGGCGACGACACCGTCGCCACATCATCACGGCCCAACGTCTCCACAACCGAGCCCTTCAAGTATAGCACGGGAGTCATCATCGGCGCGTTGGTCACCACCTCCTCCATCACCTTGCTCTTCTTCCTCTACATTAAGCATTGCGCCGATGCCAGAACCTTCGCCGCGACCGCCGCCAACTCTCAGCCCTCGCATGTGAGAAAAAACTCCGGCGTCGACCATGCCCTTCTGGATTCGTTACCGGTTTTTCAGTTTGGGTCGCTGAAGGGGCAGGGCGTTATCGACTGCGCCGTTTGTCTCGCCGTGTTCGAGGACTCCGAGGCTCTGAGGTTGTTGCCCAAGTGCAGGCATGCGTTCCACGTGGAGTGCGTGGACGCGTGGCTCCACGCGCATTCCACGTGCCCGCTCTGTCGCTATAAGGTTGAACCCGACGAGGTCGTTGTTCTCGTGGAGGAAGACGCGAAGAAGGCGAAATCTGCGGAGGGAGAATCGAGCCAAAACGACGCCGCGTTGCGAGGGGAGAACGAGAACGCTGGAACGGCGTCGTTGGACACAGCGGAACGCGGCTTGGGGCGCCGTTTTGTTGGGGTCCAGCAGCGGTTGAGCGATTTTGAGGCGCGTGATGCGTTGCGTTTGACTTCGGAAACGGCCACGTGGGAGGCACGTGGAGAGAGAGGAAGAAGGAGTCATAGTTGTGGTAATTCTGTTGGTGAGGTCATGGAAAATGATATGATGAATTTGAGAGGAAGGAGGAGTTTTCATGGTTTGCTACAATTTTGTTAG 876 0.5639 MGAATSSSPFHTLTRFFCIFTTTLTLLTPFIHGDDTVATSSRPNVSTTEPFKYSTGVIIGALVTTSSITLLFFLYIKHCADARTFAATAANSQPSHVRKNSGVDHALLDSLPVFQFGSLKGQGVIDCAVCLAVFEDSEALRLLPKCRHAFHVECVDAWLHAHSTCPLCRYKVEPDEVVVLVEEDAKKAKSAEGESSQNDAALRGENENAGTASLDTAERGLGRRFVGVQQRLSDFEARDALRLTSETATWEARGERGRRSHSCGNSVGEVMENDMMNLRGRRSFHGLLQFC 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01605 291 CDD RING-H2_EL5-like 126 169 - -
Viun8g01605 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 40 262 - -
Viun8g01605 291 SMART ring_2 127 168 IPR001841 -
Viun8g01605 291 MobiDBLite consensus disorder prediction 194 213 - -
Viun8g01605 291 MobiDBLite consensus disorder prediction 188 214 - -
Viun8g01605 291 SUPERFAMILY RING/U-box 108 175 - -
Viun8g01605 291 Pfam Ring finger domain 126 169 IPR001841 -
Viun8g01605 291 FunFam RING-H2 finger protein ATL43 103 176 - -
Viun8g01605 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 175 IPR013083 -
Viun8g01605 291 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01605 Viun-Chr8 27002664 27003539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01605 56 180 C3H Transcription Factor Family AT5G05810 47.518 2.43e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01605 K19041 - vun:114195049 541.191