Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01602 ATGCTTCCCTTTCGGAGATTCTACGGGTTCCAGAGTTGGCTAGACCACGACTCTACGCACGTTCCCAACTCGATGATTAAAAGGGCAGTGGAGTTCGACGGCGCCAGATCAAAAGCGGAACGTAAATCAACGGAAGCGTGCAAGAGTCACAGGGAAGCCGAGAGGAGACGCAGACAGAGAATCAACTCTCACCTCTCCACCTTACGTTCGCTCCTTCCTAACGCCGCCAAGTCGGATAAAGCGTCATTGCTGGCGGAAGTTGTTGAGCACGTGAAACGGTTAAGGAAGCAGGCCGATGAAGTGGCGTGCGGGGACGGCGGCGAACCGGGTTTGGTTCCGTCTGAGGCGTGGCCGCTTCCCGGGGATTGCGACGAGGCGACGGTGAGTTGGTGCGAGGGGGAGGCGAATAGGGTGAAGGCGACGGTGTGCTGTGAGGACCGGGCCGGTCTGAACCGAGACGTGACACGGGCAATCCGGTCGGTTCGGGCAAAGCCGGTTCGCGCGGAAATGATGACGGTTGGGGGAAGGACGAAGAGTGTGGTGGTGGTGGAGTGGGGTGAAGAGGAGGTGGAGGTTGGGGCGCTGGAACGGGCTTTGAAGGCCGTGGTGGAGAATCGGGCTTTGGTGGGCTTAGGAATGGGCCCTGTTGTTTTGGGCCAGAAACGGGGTAGAGATTGTTGCGGTTCGCCTAGTTCTTGTTGA 702 0.5883 MLPFRRFYGFQSWLDHDSTHVPNSMIKRAVEFDGARSKAERKSTEACKSHREAERRRRQRINSHLSTLRSLLPNAAKSDKASLLAEVVEHVKRLRKQADEVACGDGGEPGLVPSEAWPLPGDCDEATVSWCEGEANRVKATVCCEDRAGLNRDVTRAIRSVRAKPVRAEMMTVGGRTKSVVVVEWGEEEVEVGALERALKAVVENRALVGLGMGPVVLGQKRGRDCCGSPSSC 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01602 233 PANTHER TRANSCRIPTION FACTOR BHLH30 28 224 IPR045847 GO:0003700|GO:0006355
Viun8g01602 233 SMART finulus 51 100 IPR011598 GO:0046983
Viun8g01602 233 Gene3D - 39 102 IPR036638 GO:0046983
Viun8g01602 233 SUPERFAMILY ACT-like 138 204 IPR045865 -
Viun8g01602 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 100 IPR036638 GO:0046983
Viun8g01602 233 Gene3D - 135 209 - -
Viun8g01602 233 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
Viun8g01602 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01602 Viun-Chr8 26911632 26912913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01602 32 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 39.234 8.39e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g01602 HLH 8.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01602 - - gmx:100816394 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01602 8 26911632 26912913 Viun8g01602 8 26911632 26912913 ECH