Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01598 ATGTTCTCAAAACTTCATCCACAACACCAACCTTTTCAATTCTCCCGGGAATGTCAAACATCCGAGGACGATGACAGCCGGAATAGCGGTGGGCCTAACCTCGCGGCCCAGAAGCCCGTCTCCGCAGGCGATGGAGCTACAATTGAAGTAGTGCGGCGGCCCAGGGGCCGCCCTCCGGGCTCCAAAAACAAGCCCAAGCCGCCTCTTATTATTACCCGCGAGCCGGACCCCTCCATGAGTCCCTTCATTTTAGAAATCCCCGGCGGAAACGACGTCGTCGATGCCCTAGCCCGGTTCAGCCGCAGAAAGAACACGGGCCTCTGTGTCCTCACCGGTTCGGGAACTGTCGGTAATGTTACTCTCCGCCAACCCTCCGTCGCTCCCGCCGGCACTGTTACCTTCCATGGCCGCTTCGACATCCTCTCCATGTCCGCCACCTTCCTCCTCCACGCACCCCCGCCGCCGGTCCCTCCCTCCACCTTCTCCGTCTCGCTCGCCGGACCGCAGGGGCAGATCGTCGGCGGACACGTCGCTGGAAGGCTGCTCGCTGCTGGGACGGTGTTCATCATCGCCGCCTCGTTCAACAACCCCTCCTTCCACCGGCTCTCGTCGGAGGACGACGCGCAGAATAACTCCGCGTCCGGCGGCGGTGTCGGCGATGCGCAGTCACCCCCCGTCTCTGGTGGCGGCGCGGAGAGCGGACAACTTCCGGCGGAGTCGTGTATGTACAGCTGCCACCTCCCTTCGGATGTGATTTGGGCTCCGACGGCTCGACCACCTTTCTGA 786 0.6272 MFSKLHPQHQPFQFSRECQTSEDDDSRNSGGPNLAAQKPVSAGDGATIEVVRRPRGRPPGSKNKPKPPLIITREPDPSMSPFILEIPGGNDVVDALARFSRRKNTGLCVLTGSGTVGNVTLRQPSVAPAGTVTFHGRFDILSMSATFLLHAPPPPVPPSTFSVSLAGPQGQIVGGHVAGRLLAAGTVFIIAASFNNPSFHRLSSEDDAQNNSASGGGVGDAQSPPVSGGGAESGQLPAESCMYSCHLPSDVIWAPTARPPF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01598 261 PIRSF ESCAROLA 2 252 IPR014476 GO:0003680
Viun8g01598 261 MobiDBLite consensus disorder prediction 201 218 - -
Viun8g01598 261 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 206 - -
Viun8g01598 261 MobiDBLite consensus disorder prediction 1 17 - -
Viun8g01598 261 ProSiteProfiles PPC domain profile profile. 76 215 IPR005175 -
Viun8g01598 261 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 229 IPR014476 GO:0003680
Viun8g01598 261 MobiDBLite consensus disorder prediction 201 236 - -
Viun8g01598 261 MobiDBLite consensus disorder prediction 1 76 - -
Viun8g01598 261 CDD DUF296 81 194 IPR005175 -
Viun8g01598 261 Gene3D - 80 212 - -
Viun8g01598 261 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 196 IPR005175 -
Viun8g01598 261 FunFam AT-hook motif nuclear-localized protein 80 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01598 Viun-Chr8 26847899 26849255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01598 44 260 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 64.935 2.15e-95 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01598 - - gmx:100811053 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01598 8 26847899 26849255 Viun8g01598 8 26847899 26849255 ECH
Viun8g01598 8 26847899 26849255 Viun9g01937 9 29277674 29279783 PCT