Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01585 ATGGCACCCAGTTTTGATTGCTTTTCAAGCCTTCTCTGTGCGGAAGATAATATTATTTTTGACGAAAATGATCGGGGAGGTTTGGTGGAGGAGTTGGAGGACACGTGGGAGCATCCTATATATGATCGAAATCATAGTCAAATTCAGAACTTGGATGTTCAATATGTGTCGTTTCCTTTGCCGAGTGAGGAGTGTTTGAGACTAATGATGGAATCAGAATTGCATCACTTGCCTAATGGTGATTACGTTAGTAGGCTGAGGAGTGGGGATTTGGACATTGGGTCTAGAACAGAGGCCATTGATTGGATTGAAAAGGTCCGAGAGCACTTTGGTTTTGGACCTCTCTGTGCTTATCTATCCATAAATTACTTGGACCGTTTCCTCTCTGTTTATGAATTACCAAAGCAACGAGTTTGGACAATGAAATTGTTGGCTGTAGGTTGCATATCTCTGGCAGCCAAAATGGAAGAGAGTGATGTGCCTACATCTCTTGATTTGCAGGTGGGTGAATCTAAGTATATATTTGAAGCCAAAACAATTCAGAGAATGGAGCTTCTTGTTCTGAACACATTGAAGTGGAGAATGCAGGCAATTACCCCATTTTCCTTCATCGACTATTTCCTTCAGAAGATCAATGATGATGATGAAGCTCCAATTGGAGCTTCAATTTTGCAATCCTCAGAGCTTATACTGAGTACTGTAAGAGGAATTGACTTCATAGAGTTCAGACCCTCAGAGATTGCAGCTGCAGTGGCAATATCTGTGGTGGGGGATGGCCAAACAGTTGAAACAGAGAAAGCAAGTTCTGATCTGATTCAGCATGTAGAAAAGGAGAGGGTGTTGAAGTGTGTGAAAATGATCCAAGAACTTTCATCAAAGAATGGTCCTTCTGCTAAGGATTTGATTCCTTCTGTTTCTGTGCCTGAAAGCCCAATAGGGGTGTTGAACAATGCATGCTTCAGCTACAAAAGTGATGAACCAAACGTTGCTCCTTGTGCAAACTCTTCACATAGTGATACTCCAGATGCTAAAAGGAGGAAGCTAGACAAAACCTTTGGAGAATAG 1065 0.4188 MAPSFDCFSSLLCAEDNIIFDENDRGGLVEELEDTWEHPIYDRNHSQIQNLDVQYVSFPLPSEECLRLMMESELHHLPNGDYVSRLRSGDLDIGSRTEAIDWIEKVREHFGFGPLCAYLSINYLDRFLSVYELPKQRVWTMKLLAVGCISLAAKMEESDVPTSLDLQVGESKYIFEAKTIQRMELLVLNTLKWRMQAITPFSFIDYFLQKINDDDEAPIGASILQSSELILSTVRGIDFIEFRPSEIAAAVAISVVGDGQTVETEKASSDLIQHVEKERVLKCVKMIQELSSKNGPSAKDLIPSVSVPESPIGVLNNACFSYKSDEPNVAPCANSSHSDTPDAKRRKLDKTFGE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01585 354 CDD CYCLIN_AtCycD-like_rpt2 198 287 - -
Viun8g01585 354 Pfam Cyclin, N-terminal domain 66 195 IPR006671 -
Viun8g01585 354 SUPERFAMILY Cyclin-like 180 290 IPR036915 -
Viun8g01585 354 MobiDBLite consensus disorder prediction 329 354 - -
Viun8g01585 354 FunFam D6-type cyclin 192 285 - -
Viun8g01585 354 SUPERFAMILY Cyclin-like 58 195 IPR036915 -
Viun8g01585 354 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Viun8g01585 354 SMART cyclin_7 101 189 IPR013763 -
Viun8g01585 354 CDD CYCLIN_AtCycD-like_rpt1 96 193 - -
Viun8g01585 354 Pfam Cyclin, C-terminal domain 198 297 IPR004367 -
Viun8g01585 354 Gene3D - 67 286 - -
Viun8g01585 354 SMART Cyclin_C_2 198 305 IPR004367 -
Viun8g01585 354 MobiDBLite consensus disorder prediction 339 354 - -
Viun8g01585 354 FunFam D2/4-type cyclin 79 191 - -
Viun8g01585 354 PANTHER CYCLINS 67 292 IPR039361 -
Viun8g01585 354 Gene3D - 79 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01585 Viun-Chr8 26559025 26561842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01585 26 333 Core Cell Cycle Gene Families AT2G22490 45.912 5.94e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01585 K18810 - gmx:100803873 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01585 8 26559025 26561842 Viun8g01585 8 26559025 26561842 ECH