Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01576 ATGGAATTCGACGAGCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCGGACCCGCCGGTGCCAGCGCCGGTGGCAAGTTACGACTCGCTTGGAAACCCCGCGGCTCGGTCCAAAGGCGCCGGCGAGGGACGGAAGGGAGCGTTCGGCGCCGCCGCGGTACGGTACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCTGTCGACGGATGCTGCGAGTTCATGCCGGCCGGCGAGGACGGCACTCTGGAGGCCGTGATTTGCGCCGCCTGCAACTGCCACCGGAATTTTCACCGCAAGGAGATCGACGGCGAGATGAGCTCCTTCCACCACCGAGCGCAGCCGCCGCCACCGCTGCACCACCACCATCAATTCTCCCCGTACTATCACCACCGAGTCCCACAGCACCCAGCCGCCGGAGGCTACCTCCACCACCACCTCGGCACGCCTCCAATGGCGCAGCACCGCCCGCTCGCCCTCCCGGCTGCCGCCTCCGGCGGCGGACTCAGCCGCGAAGACGAAGACATCTCGAATCCGAGCAGCAGCGGCGGTGGAGGTGGCGGCGGCGGGGGATCCAAAAAACGGTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTCGCGGAACAGCTGGGGTGGAGAATCCAGAAGCACGATGAATCAGCTGTGGAACAGTTCTGTGGTGAGACGAATGTGGAGAGAAAAGTTCTGAAAGTTTGGATGCACAATAACAAGAACACTCTCGGTAAGAAACCCTAA 780 0.6269 MEFDEQEEQEEEMGMPDPPVPAPVASYDSLGNPAARSKGAGEGRKGAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMSSFHHRAQPPPPLHHHHQFSPYYHHRVPQHPAAGGYLHHHLGTPPMAQHRPLALPAAASGGGLSREDEDISNPSSSGGGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCGETNVERKVLKVWMHNNKNTLGKKP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01576 259 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 255 - -
Viun8g01576 259 MobiDBLite consensus disorder prediction 165 198 - -
Viun8g01576 259 FunFam Zinc-finger homeodomain protein 2 188 257 - -
Viun8g01576 259 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Viun8g01576 259 Gene3D - 181 256 - -
Viun8g01576 259 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Viun8g01576 259 SUPERFAMILY Homeodomain-like 183 257 IPR009057 -
Viun8g01576 259 MobiDBLite consensus disorder prediction 1 44 - -
Viun8g01576 259 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Viun8g01576 259 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01576 Viun-Chr8 26386168 26387352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01576 1 255 ZF-HD Transcription Factor Family AT4G24660 52.941 2.44e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun8g01576 ZF-HD_dimer 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01576 - - gmx:100776421 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01576 8 26386168 26387352 Viun8g01576 8 26386168 26387352 ECH
Viun8g01576 8 26386168 26387352 Viun9g02682 9 35686169 35688048 PCT