Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01562 ATGGGCATCCACATGGAATGCCCTGCACCTCCACCTGCACCGCGGATCATGAATCTGTATCATGATCCTGCACGTTTTTGCCTTCTTATCCTCCTTCTCGTGCCGCCGGTCGCAGCACAGTTTCAAAACTCGCCGCCGTCACCGTCGCAGTTGGATCCTTTCACGAGACTGAGGTTCGACAAGACCATGGCTGCGGTTCTTGTCATCCTCGTCGTGGTCTTCTTCGCTTTGGGATTCGTGTCCATCTACACGCGCCAATGCGCTGAGCGGCGGATGAGGGGGAGGCTCGACCTGGCCGTGGCGATCGCCGGCGGGATGGAGCGGCGGCAGCATCATGGGCTCGACCGGGCGACCGTGGACACGTTCCCGACGTTCGTGTACTCCGAGGTTAAAGCCCTGAAGATCGGGAGGGCCACGCTGGAATGCGCTGTGTGTCTCAACGAGTTCCGCGACGACGAAACGCTGCGTTTGATCCCAAAATGCTGCCACGTGTTCCACCCCGATTGCATCGATTCTTGGTTGGTGAATCACTCCACTTGTCCAGTTTGCCGCGCCAACCTCTCGCCGAAGCCCGAGGACGCGCCTCCTCCCGTTGAGATTCACATTCCGGATTCGGCCCGGCCCAACGGGCCAAACGCAGAGCCCGATTATGATCCCAATTACATCAACCCTGTCCGTGAAGGTGAAGGTGAAGGTGAACGAAACAGAATAGCTACGGAGCCTCTTAGTATAGATGATCCGAACCGGGCCCGTCCCATTCGGTCTAGATCGACCGGTTTTGGAGTTTCAAGGCTGTTTCCGCGGTCCCATTCAACGGGTCATTCTCTGGTTCGACCTGGAGAGGACTGCGAGCGGTTCACACTGCGGTTGCCAGAGGATGTGAGGAACCAGCTCATGAGTTCTGGGACGCTGAACCGGACCAAGAGTTGTGGGGTGACGTGGGAGCGGCAGAGTAGTGGAAGGAGGGGTTACAGAACGAGGAGTGTGGGGAGAAGCTATCTGCGATACGAGCGGTTCGGTGGGGAATGGCGGTTGGACAGGTGGGGGTTCATGTGGACCCCACCGTTTTGGGGTAGAACCGGTTCGGGGAGATCAGCAAAGTCAACGAAGAAGAAGGATGAAGTGGACGTGGGAGAACGTTCCTCTGATCTTTTATTTACCAGAGATTGA 1170 0.5735 MGIHMECPAPPPAPRIMNLYHDPARFCLLILLLVPPVAAQFQNSPPSPSQLDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRMRGRLDLAVAIAGGMERRQHHGLDRATVDTFPTFVYSEVKALKIGRATLECAVCLNEFRDDETLRLIPKCCHVFHPDCIDSWLVNHSTCPVCRANLSPKPEDAPPPVEIHIPDSARPNGPNAEPDYDPNYINPVREGEGEGERNRIATEPLSIDDPNRARPIRSRSTGFGVSRLFPRSHSTGHSLVRPGEDCERFTLRLPEDVRNQLMSSGTLNRTKSCGVTWERQSSGRRGYRTRSVGRSYLRYERFGGEWRLDRWGFMWTPPFWGRTGSGRSAKSTKKKDEVDVGERSSDLLFTRD 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01562 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 190 IPR013083 -
Viun8g01562 389 SMART ring_2 142 183 IPR001841 -
Viun8g01562 389 SUPERFAMILY RING/U-box 121 198 - -
Viun8g01562 389 PANTHER RING FINGER DOMAIN-CONTAINING 37 190 - -
Viun8g01562 389 MobiDBLite consensus disorder prediction 360 389 - -
Viun8g01562 389 MobiDBLite consensus disorder prediction 366 389 - -
Viun8g01562 389 CDD RING-H2_EL5-like 141 184 - -
Viun8g01562 389 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Viun8g01562 389 FunFam E3 ubiquitin-protein ligase ATL6 83 190 - -
Viun8g01562 389 Pfam Ring finger domain 141 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01562 Viun-Chr8 26094281 26096127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01562 28 380 Rapid Response to Elicitors AT3G05200 39.529 8.61e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01562 K10664 - gmx:100815982 570.466