Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01561 ATGCAAAAAGAGAGTCCTCTCATTAGACTCCACAGTTTCGACCAAGGCCATGCATGGCTCGCTCTGTTGCACCTTCTCATTCACATGTCACTGCCAGTAACCGGTCAACCGGTAACTCCGACAATAGAACCCGGCAGCAACAAATCCGTGATCGTCATCATGGTCATCATCGCCTTAATGTTCCTCATCTCAGCCTTCATCTCTCTCTATTCTCGCAAATGCTCCGACGGACAAGCGCATGAACGTGGCACTCTCGACCTCGCCGCATCCACCGGCGCAATCGGTAACCCGTCGTCGCAAAGCGAACCCAACGGTCTCAGCAAGGCCACCATAGAAACCTTCCCCACATTCCTCTTCTCCGACGTGAAGAGTTTCAAAATAGGAAAAGACACTTTAGCATGTGCTGTGTGCTTGAGTGAGTTCCAAGACCACGATACCCTTCGTATGATCCCCAAATGTTGCCACGTGTACCACCCCAGTTGCATCGACGTGTGGTTAGCTTCTCACTCCACTTGTCCAGTGTGTCGCGCCAACCTCGTTCCACAACCTGAAGACGTAGACACAAACACGAACATGCTACCCATGTTGTCCATTCAGGTACCCGATGAACATGAGCATGAAGACGAAAGTGGTGAACATGAACACGAGAGTGTTATCAGTGAGGAAGGGAAAAGAGGGCATGGTGAACTGGAGTCACCGAAGGTGGATTTGCTTCGAAGGATTCACTCGTTGCATCAGAGTCGTCCTTCACGGTCGAGATCCACAGGGTTCTTATCCTCTCTCTTGTTTCCGCGATCGAACTCAATGGGGCAATTGGCGCAGCAAGTGGAGAACTATGACAGGTTTACGCTAAGGTTACCGGAGGAGGTACAAAACCAGATGATGAACTCGAAGCTTAAACGTGCGAATAGTTGTGCATGCTTTACGAGAATGAGCAGTGGCACGTGGGGGTATAGGACAAGAAGCGTGGGAAGTGGACGTGGAAGAGGGTGCGTGCAGTACGAGAGGTTCAATGGTGAGGAACAATGGGGTTTCACTTTGACCTCACCAAACCTTGTTAAAAGCGGTTCAAATAGATCCTCCAGAAAATCACTGGTTCAATGTTCGGGTGTGGTGCTAGATAATATTAATAATCCTAATGAACGGTCCTCTGAATTCTTGCGTCTTGGGTAG 1173 0.4962 MQKESPLIRLHSFDQGHAWLALLHLLIHMSLPVTGQPVTPTIEPGSNKSVIVIMVIIALMFLISAFISLYSRKCSDGQAHERGTLDLAASTGAIGNPSSQSEPNGLSKATIETFPTFLFSDVKSFKIGKDTLACAVCLSEFQDHDTLRMIPKCCHVYHPSCIDVWLASHSTCPVCRANLVPQPEDVDTNTNMLPMLSIQVPDEHEHEDESGEHEHESVISEEGKRGHGELESPKVDLLRRIHSLHQSRPSRSRSTGFLSSLLFPRSNSMGQLAQQVENYDRFTLRLPEEVQNQMMNSKLKRANSCACFTRMSSGTWGYRTRSVGSGRGRGCVQYERFNGEEQWGFTLTSPNLVKSGSNRSSRKSLVQCSGVVLDNINNPNERSSEFLRLG 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01561 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 181 IPR013083 -
Viun8g01561 390 CDD RING-H2_EL5-like 134 176 - -
Viun8g01561 390 FunFam E3 ubiquitin-protein ligase ATL6 95 182 - -
Viun8g01561 390 PANTHER RING FINGER DOMAIN-CONTAINING 47 184 - -
Viun8g01561 390 SMART ring_2 134 175 IPR001841 -
Viun8g01561 390 SUPERFAMILY RING/U-box 129 186 - -
Viun8g01561 390 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Viun8g01561 390 MobiDBLite consensus disorder prediction 201 232 - -
Viun8g01561 390 Pfam Ring finger domain 133 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01561 Viun-Chr8 26039490 26040662 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01561 47 297 Rapid Response to Elicitors AT2G35000 38.224 1.30e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01561 K10664 - gmx:100814384 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01561 8 26039490 26040662 Viun8g01561 8 26039490 26040662 ECH
Viun8g01561 8 26039490 26040662 Viun9g02615 9 35189789 35191453 PCT