Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01560 ATGGCCCTAGAGGCCGTGGTTTTCCCACAAGATCCATTCAGTTACCCTTGCAACAAAGACTACTTCTACTCGCTGCTGCACAACAATTTTCAAGAAGCAGAAAACAAAGCCTTTGTAGGAATCATCACCAACAACATAGACCACACTCTGCATGCAAATTGGGATTCTTCTTCTCCTTCACCTTTGCAAAATATCAAAGACCAATGGGACTCACACTCCTCCCCTGAACCCTGCACCGTCGATCAATCTCTCCCCGCCGCTTTCCCTCCTCCTCCTCCCTCCGAACCCACCACCGCCACCGCCCGCCGCAAACGCCGCCGCACCAAGAGCACCAAGAACAAGGAGGAGATCGAGAATCAAAGAATGACCCACATTGCAGTTGAACGCAATCGAAGAAAACAGATGAACGAGTACCTCGCCGTTCTCAGATCCTTGATGCCACCCTCTTATGTCCAAAGGGGTGATCAAGCGTCTATCATTGGTGGCGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGGCAGCAGAGAACAAACGAAAATGGCGGTGGCTTCTCTGACCCATCATCATCACCCTTTGCTGAGTTCTTCATGTTCCCTCAGTACTCGACACGTGCGACACAGAACGGCAGAGGCTACCCTAGCACGTGCGAAGCACGGAGCCATTCATGGGCCGTGGCGGACATAGAAGTGACCCTTGTGGATGGTCATGCCAACATAAAGATACTCTCCAAGAAACAACCAGGCTTGCTTCTGAAGATGGTGGCTGGCCTTCAAACTCTCGCCTTCACCATTCTCCACCTTAACGTTACCACTGTCCACGACATGGTCCTTACCTCGGTTAGTGTTAAGGTGGAGGAAGGGTGTCAGATGAACACAGTGGAGGAAATTGCAGGTGCAGTGCATGAATTATCCCGCACGATTCAGGAGGAAGGTGTTTTGAGGTGA 963 0.513 MALEAVVFPQDPFSYPCNKDYFYSLLHNNFQEAENKAFVGIITNNIDHTLHANWDSSSPSPLQNIKDQWDSHSSPEPCTVDQSLPAAFPPPPPSEPTTATARRKRRRTKSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQQRTNENGGGFSDPSSSPFAEFFMFPQYSTRATQNGRGYPSTCEARSHSWAVADIEVTLVDGHANIKILSKKQPGLLLKMVAGLQTLAFTILHLNVTTVHDMVLTSVSVKVEEGCQMNTVEEIAGAVHELSRTIQEEGVLR 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01560 320 PANTHER MAX DIMERIZATION, MAD 70 316 - -
Viun8g01560 320 FunFam Basic helix-loop-helix transcription factor 110 185 - -
Viun8g01560 320 Pfam Helix-loop-helix DNA-binding domain 120 171 IPR011598 GO:0046983
Viun8g01560 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 183 IPR036638 GO:0046983
Viun8g01560 320 MobiDBLite consensus disorder prediction 55 80 - -
Viun8g01560 320 CDD bHLH_AtFAMA_like 122 195 - -
Viun8g01560 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Viun8g01560 320 MobiDBLite consensus disorder prediction 55 116 - -
Viun8g01560 320 Gene3D - 109 186 IPR036638 GO:0046983
Viun8g01560 320 SMART finulus 125 176 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01560 Viun-Chr8 26023119 26025450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01560 1 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.125 6.44e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g01560 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01560 - - gmx:100797856 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01560 8 26023119 26025450 Viun8g01560 8 26023119 26025450 ECH
Viun8g01560 8 26023119 26025450 Viun9g02614 9 35164685 35166500 PCT