Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01559 ATGGCCAAAAAACTCAGAAAACTCTTCCCAGATGAAACAACAACCTCAAACCAAACCCAAACACAAGATTGCTATGGCTTATGCGACCCTGCATGCCCTTACAACTGCTACACTAACCAAGACTACTTCTTGTCTCCACCACCACCATTTGTTTCACCATCAACACAAGTTAACCACATATCCTCCTACGTGATCATCCTCGGAACTCTCTTCGCTGTCGTTTTTGTTGTCCTAGGTTTCTACGTGATCAAAGTGAAGTGCTATGCTGCATGGTGTGGGTGGCGGCTCAACGGGTCCCTTCCTTCTCAATCAGACACCACCACCGAGGAGTTTCTCCATGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACGGTGGGGTTGCAACAATCCATCATAAACTCCATCACGGTGTGCAAGTACAAAAGCAACGAAGGGTTGGTTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTCCAAGAGGAAGAGACCTTGAGACTCTTGCCAAAGTGCAACCATGCTTTTCACATCCCTTGTATTGACACTTGGTTGAGATCACACACCAATTGTCCTCTTTGTCGCGCAGGTATTGTCTCTAGCAGTGTTATTTCTGAAGCACCCGTGTCGAATTTGGAGCACGAGAATGCAAATTTGGGAAGAAATCAAGAGACCCTTATGGAGAATTCAAGGAATGAAGGCTCGTTAAACAGCAACACGGTTGCAGGGGAATCAAGTGAAGCACTAGAGTTGGTTGATGAATCAAATTCTAAGGATCGCGTGCATGATCAAACTCAGAACCATCACGTTCTGGAAATTGAGATTCACACAGAAATGGGGTCTGTTTCAACCACAGAATCTGAAAGCCATCATGTTGGTGATGAACATAAACATGTTAATCGACGGAAGCAAGAGCAAGATGGTGATTACCACCCAAAAACGTGTAAAACAATGCGTCGTTGTTCCTCTATTGAAGAGTGTTTGCATTTAAGCCCGGTATCCATGAAAAGATCATTCTCCTGCAATGGAAGGATTCTAACTTCCAGAGGTTGCATGACTTTAAACTCTAGGCTCCATTCATCTCTGCCAGAATTTTCAATCTGTTAG 1110 0.4495 MAKKLRKLFPDETTTSNQTQTQDCYGLCDPACPYNCYTNQDYFLSPPPPFVSPSTQVNHISSYVIILGTLFAVVFVVLGFYVIKVKCYAAWCGWRLNGSLPSQSDTTTEEFLHENQVDHPVWLIATVGLQQSIINSITVCKYKSNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSSSVISEAPVSNLEHENANLGRNQETLMENSRNEGSLNSNTVAGESSEALELVDESNSKDRVHDQTQNHHVLEIEIHTEMGSVSTTESESHHVGDEHKHVNRRKQEQDGDYHPKTCKTMRRCSSIEECLHLSPVSMKRSFSCNGRILTSRGCMTLNSRLHSSLPEFSIC 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01559 369 Pfam Ring finger domain 153 196 IPR001841 -
Viun8g01559 369 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Viun8g01559 369 MobiDBLite consensus disorder prediction 289 312 - -
Viun8g01559 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 204 IPR013083 -
Viun8g01559 369 Coils Coil 210 230 - -
Viun8g01559 369 CDD RING-H2_EL5-like 153 196 - -
Viun8g01559 369 FunFam RING-H2 finger protein ATL54 129 202 - -
Viun8g01559 369 SMART ring_2 154 195 IPR001841 -
Viun8g01559 369 SUPERFAMILY RING/U-box 144 201 - -
Viun8g01559 369 MobiDBLite consensus disorder prediction 284 312 - -
Viun8g01559 369 PANTHER RING-H2 FINGER PROTEIN ATL16 45 329 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01559 Viun-Chr8 25991007 25992776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01559 3 206 C3H Transcription Factor Family AT1G72220 46.983 2.29e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01559 - - gmx:100805705 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01559 8 25991007 25992776 Viun8g01559 8 25991007 25992776 ECH