Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01523 ATGGCAGAAGCAGAAGATGATCCTCTAGAAAAGCTGCTTCTAAAATTACACAAGTTGAAAATAGGACCGGTAGAGCTAGAGTGGGAGTTAAGAGTATTTGGCCTCCATTGTCATGTCCCATTATGCTGGAGAGAGATGGTGTTATTGTTGATGTTCTTGCTGTTTCTGGTCCAACAAATATGTGCGATAAATGAGCAAGAGTACGCTCTTGATTGTCCCACTTCTTCCTGTGGGAAAATCGCAAACATAAGGCCTCCATTTAGGTTGAAAGGTGACCCAATATATTGTGGCGACAACAGGTATGAGCTGGATTGTGAAAACAATGTGACGGTGTTATATTTGTACGGGGGAAAATATCATGTGCAGGCCATCAACTACAATAATTTCACAGTCCGAGTGGTTGATCCAGGAGTTGAAGAACAAAGCTTCTCACTTCCACGCTATTTCCTGTCTCAATCCAATTTCACTGATAATTATCGTGCTGTAGATCCATACCGAGCCACTCAAGCCCAATTGTCTAAACTTAGTTTTAACGAGAAGAGTCTTTTCAAGCACATAATTTTCATGAATTGCAGCCATCCAGTGAGTGAGAATTATAAGTACGTGAACACTACTCCGTGGGTGAAGTGGGAGACAAAAGGGTATACATATGCCATTGCTGGTGACTTAACAGCAGCGGACTTTGAAGTTGGTTGTCGTATAAAGCTGCTTTCTCCGACGTCGTGGTGGGGTTTGCACGCAAATAAATCTTCCTACACTATGATGAACTCAGCGCTACTTTATGGATTTGAGATGTCGTGGCTACATACTGGCTGTGAGGATGAATGTGGAAACTCATCTCATGGCGAGTGCTATTTCGACTCTTCCATCCTCAAGCTTCAATGCACCCTCTTCTGCAACGATATATTCGGACTACTGCAAACGGAATGTGATTTTGTGACTTATGTTTGGACAGGAGTCCATGCAACAATAAAAGAAGGGAACCTAATATTTGAAAAAGTAGACCTTAGCTTTGCATCAATATCATTTATCATTGGACGCTATGCTTTACCATTATTCTTGCTACTCAGATTTTTGTTTGCGGTGACATTACTTATTGTGATTTTGATATACAAATGGCGGAGAAGGCATTTATCAATGTATGAAAATATTGAAAATTATCTAGAAGACAATAACTTGATGCCTATTAGATACTCATACAAGGAAATCAAGAAGATGGTTAAAGGTTTCAAAGAAAAATTGGGTGAAGGAGGTTATGGCTCGGTGTTCAAGGGAAAATTATCTAGTGGAACTTGTGTGGCAATAAAAATGCTAGGTAAATCAAAAGGTAATGGACATGACTTTATCAATGAAGTTGCTATCATTGGAAGAATACATCATCAAAACATATTACAGTTAATTGGATTTTGTGTTGAGGGTTCAAGACGTGCTCTTGTTTATGAATTCATGTCCAATGGATCTCTTGATAAAATTATTTTTTCTAAAGACCAAAGTGTAGATTTTGGTTATGACAAAATATATAATATGTCAATTGGGATAGCTCGAGGAATTGCTTATCTCCACCATGGATGTGAGATGCAAATTTTGCATTTTGATATAAAGCCACACAATATTCTACTTGATGATGATTTCATTCCAAAGGTATCTGATTTTGGATTGGCAAAGCTATATCCGGTAGATAATAGCATTGTCACCATGACAACAGTGGGAGGAACAATTGGATATATGGCTCCAGAATTGTTTTATAAAAACATTGGGAGAATATTTCATAAGTCTGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTAGAAGGAAAAACTTGAATCCCCAAGTAGAGCATTCAAGCCAAATTTACTTTCCCTCTTGGATTTATGAAAACATTAGAGAACAAAAAGATATAGAACTAGAAGGTATCACAGAAGAGGAAAAGAAAATAGCAAAGAAGATTATTGTAGTTGCACTATGGTGTATACAAATGAATCCAAATGATCGTCCCTCTATGAACAAAGTAGTAGAAATGCTCGAAAGAGATATAGAAAACTTGGAAATTCCTCCAAAATTTTCTTTATATCCATGTGAAGCTGCGGAAAACTCCAAACAAACAATAACAAGTGAATTTATTAGTTATTCTAGTACTCTAGAGAATCAGAACCAATCCTACAATAGGGTATAA 2184 0.3727 MAEAEDDPLEKLLLKLHKLKIGPVELEWELRVFGLHCHVPLCWREMVLLLMFLLFLVQQICAINEQEYALDCPTSSCGKIANIRPPFRLKGDPIYCGDNRYELDCENNVTVLYLYGGKYHVQAINYNNFTVRVVDPGVEEQSFSLPRYFLSQSNFTDNYRAVDPYRATQAQLSKLSFNEKSLFKHIIFMNCSHPVSENYKYVNTTPWVKWETKGYTYAIAGDLTAADFEVGCRIKLLSPTSWWGLHANKSSYTMMNSALLYGFEMSWLHTGCEDECGNSSHGECYFDSSILKLQCTLFCNDIFGLLQTECDFVTYVWTGVHATIKEGNLIFEKVDLSFASISFIIGRYALPLFLLLRFLFAVTLLIVILIYKWRRRHLSMYENIENYLEDNNLMPIRYSYKEIKKMVKGFKEKLGEGGYGSVFKGKLSSGTCVAIKMLGKSKGNGHDFINEVAIIGRIHHQNILQLIGFCVEGSRRALVYEFMSNGSLDKIIFSKDQSVDFGYDKIYNMSIGIARGIAYLHHGCEMQILHFDIKPHNILLDDDFIPKVSDFGLAKLYPVDNSIVTMTTVGGTIGYMAPELFYKNIGRIFHKSDVYSFGMLLMEMASRRKNLNPQVEHSSQIYFPSWIYENIREQKDIELEGITEEEKKIAKKIIVVALWCIQMNPNDRPSMNKVVEMLERDIENLEIPPKFSLYPCEAAENSKQTITSEFISYSSTLENQNQSYNRV 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01523 727 Gene3D Phosphorylase Kinase; domain 1 382 482 - -
Viun8g01523 727 SUPERFAMILY Protein kinase-like (PK-like) 394 679 IPR011009 -
Viun8g01523 727 SMART serkin_6 408 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01523 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Viun8g01523 727 Pfam Protein kinase domain 411 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01523 727 Pfam Wall-associated receptor kinase galacturonan-binding 72 135 IPR025287 GO:0030247
Viun8g01523 727 Gene3D Transferase(Phosphotransferase) domain 1 483 693 - -
Viun8g01523 727 ProSiteProfiles Protein kinase domain profile. 408 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01523 727 FunFam PR5-like receptor kinase 483 690 - -
Viun8g01523 727 ProSitePatterns Protein kinases ATP-binding region signature. 414 436 IPR017441 GO:0005524
Viun8g01523 727 PANTHER RUST RESISTANCE KINASE LR10-RELATED 381 700 IPR045874 GO:0004672
Viun8g01523 727 FunFam serine/threonine-protein kinase PBS1-like 377 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01523 Viun-Chr8 25200272 25228074 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01523 50 694 Receptor kinase-like Gene Family AT5G38260 33.533 1.58e-106 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01523 Pkinase 7.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01523 - - vun:114195039 1437.17