Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01522 ATGACCATATGGAAAGATATGGTGTTATTGGTGATGTTCTTGCTGTTTGTAGTCCAACAAATATGTGCTAGGAATGAGCAAGAACACGCCAGTGATTGTCTCCCTTCTTCCTGTGGGAAAATCGCAAACATAAGTCGACCATTTAGATTGAAAGGTGACCCGGTACATTGCGGCGACAGAAGGTATGAACTGAGTTGTGAAAATAATATTACAGTGTTAAATTTGTATTCGAGAAAATATCATGTGCAGGCAATCAACTACATTAATTTCACACTCCGGGTGGTTGATCCGGGAGTTGAAGAACAAAGTTGCTCCTCCCTTCCTCGCTATTTCTTGTCTCGATCCAATTTCAGTGATGCTTATCATGCTGGCGATATGGATCCATACCGAGCCACCCTAGACCAATTCTCTGAGGTTGGTCCTCACCGGAAGAGTCTTTTCCAGCACATAATATACTTGAATTGCAGCCATCCAGTGAGTGAGAATTATAAGTACGTGAATACTACTCCGTGTGTTAAGTGGGAGTCGAAAGGGTATATGTATGCCATTGCTGGCGACTTAACATCAGCGGACTTTGAAGTTGGTTGTCGTATAAAGCTGCTTTCTCCGACGTCGTGGTGGGGTTTGGACGCAAATAAATCTTCCTACACTATGATGAACTCAGCGCTACTTTATGGATTTGAGATTTCGTGGAAAAATTTCGCCTGTGAGGATCAATGTCACTCACCATATGGCGACTGCTATTTCGACTCTTCCACCCTCAAGCTTCGATGTTTCCCCTACTGCAACGATATATTCGGAGTACTGGAAACCAAATGTGGTACCGGGATATGGTTACAGGTGCTTGCTTATCCAGCATATTTTCTGAATAACATTTATGCAGCACTGCTTGAAGCAATACAAGGAAACCAAAGATTTGATGAAAATCTCTATCTTGAACCAGCATCGTTCATTATAGGACACTATGTTCTACCAGTATTTTTGTTAGTGAGATTTTCGTTGGGGGTGACATTACTTATTATGCTTTTGACATACAAGTGGCGGAAAAGGCATTCTTCAATATATGAAAATATTGAAAATTATCTAGAACACAATGAATTGGTGCCTATTAGATACTCATACACCGAAATCAAGAAGATGGTTAGAGGTTTTAAAGAAAAATTAGGTCAAGGAGGCTATGGTTCTGTATTTAAGGGAAAGTTATCTTCTGGAACTTGTGTTGCAATAAAAGTGTTAGGTAAATCAAAAGGTGATGGACATGATTTTATAAGTGAAGTTGCTACCATTGGAAGAATACATCATCAAAATGTAGTACATTTAATTGGATTTTGTGTTGAGGGTTCAAGACGTGCTCTTGTTTATGAATTCATGTCCAATGGATCTCTTGATAAAATTCTTTTTTCTAAAGATAGAAATATAGATTTCGGATATGACAAAATATATAATATAGCAATTGGGGTAGCACGTGGAATTGCTTATCTCCACCATGGATGTGAGATGCAAATTTTGCATTTTGATATAAAGCCCCATAATATTCTACTAGACGATAATTTCAATCCCAAGGTTTCTGATTTTGGATTGGCAAAGTTATATCCGATGGATAATAGCATTGTCACCATGACTGTAGTGGGAGGGACAATTGGATATATGGCTCCAGAATTATTTTATAAAAACATTGGAAGAATATCTTATAAGTCTGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGCAAAAGGAAAAACTTAAATCCCCACGCAGAGCATTCAAGTCAAGTTTACTTTCCATCTTGGGTTTATGAAAACATTAAAGAAGAGAAAGATATAGAAATGGAAGATATCACTGAGGAGGAAAAGAAAATAGCAAAGAAGATGATTATAGTTGCAATTTGGTGTATACAAATGAATCCAAATGATCGTCCTTCCATGAACAAAGTAGTGGAAATGCTTGAAGGAGATATGGAAAACCTAAAAATCCCTCCAAAATTTTCTTTATATCCATATGAAGTCACAGAAAATTTCAAACACACAATAGCAAGTGAATTTACTAGTTATTCTAGTTCCTCTATGAAAATTGCAACTAACAAATAA 2097 0.372 MTIWKDMVLLVMFLLFVVQQICARNEQEHASDCLPSSCGKIANISRPFRLKGDPVHCGDRRYELSCENNITVLNLYSRKYHVQAINYINFTLRVVDPGVEEQSCSSLPRYFLSRSNFSDAYHAGDMDPYRATLDQFSEVGPHRKSLFQHIIYLNCSHPVSENYKYVNTTPCVKWESKGYMYAIAGDLTSADFEVGCRIKLLSPTSWWGLDANKSSYTMMNSALLYGFEISWKNFACEDQCHSPYGDCYFDSSTLKLRCFPYCNDIFGVLETKCGTGIWLQVLAYPAYFLNNIYAALLEAIQGNQRFDENLYLEPASFIIGHYVLPVFLLVRFSLGVTLLIMLLTYKWRKRHSSIYENIENYLEHNELVPIRYSYTEIKKMVRGFKEKLGQGGYGSVFKGKLSSGTCVAIKVLGKSKGDGHDFISEVATIGRIHHQNVVHLIGFCVEGSRRALVYEFMSNGSLDKILFSKDRNIDFGYDKIYNIAIGVARGIAYLHHGCEMQILHFDIKPHNILLDDNFNPKVSDFGLAKLYPMDNSIVTMTVVGGTIGYMAPELFYKNIGRISYKSDVYSFGMLLMEMASKRKNLNPHAEHSSQVYFPSWVYENIKEEKDIEMEDITEEEKKIAKKMIIVAIWCIQMNPNDRPSMNKVVEMLEGDMENLKIPPKFSLYPYEVTENFKHTIASEFTSYSSSSMKIATNK 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01522 698 Gene3D Phosphorylase Kinase; domain 1 356 456 - -
Viun8g01522 698 Gene3D Transferase(Phosphotransferase) domain 1 457 671 - -
Viun8g01522 698 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Viun8g01522 698 FunFam PR5-like receptor kinase 457 664 - -
Viun8g01522 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Viun8g01522 698 SUPERFAMILY Protein kinase-like (PK-like) 367 653 IPR011009 -
Viun8g01522 698 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Viun8g01522 698 ProSiteProfiles Protein kinase domain profile. 382 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01522 698 FunFam serine/threonine-protein kinase PBS1-like 350 456 - -
Viun8g01522 698 Pfam Protein kinase domain 385 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01522 698 CDD STKc_IRAK 388 654 - -
Viun8g01522 698 PANTHER RUST RESISTANCE KINASE LR10-RELATED 355 671 IPR045874 GO:0004672
Viun8g01522 698 Coils Coil 602 622 - -
Viun8g01522 698 SMART serkin_6 382 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01522 Viun-Chr8 25182193 25185981 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01522 11 668 Receptor kinase-like Gene Family AT5G38260 34.467 8.62e-112 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01522 Pkinase 3.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01522 - - vun:114195039 1041.18