Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01520 ATGTCTGTTTTACCTTGTTGTAATCGCTGCACGCAATCAGTGGTTGTCTCTGTGTTCACCATTCTTGTGCTGTTCCACCAAACTTGCTGTGCTAAGCATCGCGCATCCTGTCCATCTTCTTCGTGCGGCGAAATTCACGAAATAAAACATCCATTCCGACTGAAAGACGACCCTCGAGATTGCGGCCTTCCCGAGTATGAATTTGATTGCGTGAATAACAGACCATTAGTTACACTGTTTTCAGGGAAATACTTTGTGGAAGAAATCAATTACGATAGGTACCAAATCCGACTGATTGATCCGGGTGTTGTGGAGGACACTTCTTGCTCTTTTCCTCGCTATTTCTTATCCACACAAAATTTCAGTGGATATGACGATGATCTGCTGGCTACGTTGTCTGGGGAGGACTATGAGTCTGAGACTGCCAAAGTAGCGTTTGGGGAGAATGTGTATGAGCCTGCAAAAGTGGTGTTTCTAAATTGTAGTGATCGAGTGAGTGATGATCCTCGATATGTGGAAGTGAAATCCGGCGGTTGTGATTCCGGAGGCTATATCTACGCCGTTGTGGATCGCGGTAAGAAGTTTCATCCGGAATTTACAGTGATGGACGTGAAGGCAGGGTGCAGTTTAAAGGTTGCTACCTTCGCAAACTGGACACATGGTGTTTCCTATAGAGAGTCGACAGATAACAGGAACGTTTCCTATGCTGATATCCTTAAATCTCTGGAAAAGGGATTTTGGTTGACTTGGTTACCACTTGTTTGTAGGGATCACTGTGGAAATGGTATCTCTTGCATCCTCAATCAAACCACACAAGAAATTCAGTGCATTGGTTGTCTTAGGATGAACTACTATGGCAGCAATTGTGGAACGCTATCTTTAATTGAAGAATACCTTACAGGTTTTTTTGTTGGTATTATAAAAGGATTTCTTCATACAATAAAAATCGTCAAACGATCATCACCGTATTGGAATATTGAGGGAGAATTTATAGGCGATGTAATTCTACCAATATTTATAGCAGCTAGATATTTATTCATAGTCCTACTTTTTCTAGTGCTAATCATCTATAAATGGCGTAAAAGACATTTTTCAATGTTTGAAAACATTGAAAAGTTTTTGTTAGACAACAATATAAATCCAATTAGATACGAGTACAAAACGGTCAAGAAAATAACTAGAGGTTTTAAAGTGAAGTTAGGAGAAGGAGGTTTTGGTTGTGTGTACAAAGGAAAGCTTCGAAGTGGGTTAGATGTTGCAGTAAAGATGTTGAGCAAATCTAAGAATAATGGACAAGAGTTTGTTAATGAAGTAGCTAGCATCGGAAGAATACATCATGTGAATGTAGTAGGTCTTATTGGATATTGTGTTGAAGGAAAAAATCGTGGCTTGATTTATGAATACATGTCTAATGGGTCATTGGATAAATATATTTTCTCTAAAGAAGGAAGTGTTCTTCTAAGTTATGAGAAGATTTATGAAATATCTCTTGGAATTGCTCATGGGATAACATATTTACATCGAGGTTGTGATGTGCAAATTTTACATTTCGATATTAAGCCTCATAATATTCTTTTAGACGATAACTTTACTCCAAAGGTTTCAGATTTTGGGCTTGCAAAGTTGTATCCTACAAAGGATGGATCCATTATTTTGACTGCAATAAGAGGAACATTGGGTTACATGGCTCCAGAATTATTCTACAAAAATGTAGGTGGAGTTTCTTATAAAGCCGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTAGGAGGAAAAATTCAAATCCTCTTGCGGAACATTCAAGCCAACATTATTTTCCATTTTGGATCCATGATCAATTTAAAGAAGAGAAAGATATTGACATGAAAGATGCTTCAGAAACGGATAAGATTTTGATGAAAAAAATGTTCATAGTTGCACTTTGGTGTATACAATTCAAACCAAGTGATCGTCCATCAATGAGCAAGGTTGTAGAGATGCTTGAAGGAAAAGTTGAAACTCTTGAAATTCCTCCCAAACCTTCTTTTTATCTTCATGAAATATTAGAACATGATGGTACAATCAACTCATGGAGTGATTCAACTAGTTCTAATGTGAATGTTGATACAAACATGCCTAATCACTAG 2136 0.3755 MSVLPCCNRCTQSVVVSVFTILVLFHQTCCAKHRASCPSSSCGEIHEIKHPFRLKDDPRDCGLPEYEFDCVNNRPLVTLFSGKYFVEEINYDRYQIRLIDPGVVEDTSCSFPRYFLSTQNFSGYDDDLLATLSGEDYESETAKVAFGENVYEPAKVVFLNCSDRVSDDPRYVEVKSGGCDSGGYIYAVVDRGKKFHPEFTVMDVKAGCSLKVATFANWTHGVSYRESTDNRNVSYADILKSLEKGFWLTWLPLVCRDHCGNGISCILNQTTQEIQCIGCLRMNYYGSNCGTLSLIEEYLTGFFVGIIKGFLHTIKIVKRSSPYWNIEGEFIGDVILPIFIAARYLFIVLLFLVLIIYKWRKRHFSMFENIEKFLLDNNINPIRYEYKTVKKITRGFKVKLGEGGFGCVYKGKLRSGLDVAVKMLSKSKNNGQEFVNEVASIGRIHHVNVVGLIGYCVEGKNRGLIYEYMSNGSLDKYIFSKEGSVLLSYEKIYEISLGIAHGITYLHRGCDVQILHFDIKPHNILLDDNFTPKVSDFGLAKLYPTKDGSIILTAIRGTLGYMAPELFYKNVGGVSYKADVYSFGMLLMEMASRRKNSNPLAEHSSQHYFPFWIHDQFKEEKDIDMKDASETDKILMKKMFIVALWCIQFKPSDRPSMSKVVEMLEGKVETLEIPPKPSFYLHEILEHDGTINSWSDSTSSNVNVDTNMPNH 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01520 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Viun8g01520 711 Pfam Protein kinase domain 398 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01520 711 ProSitePatterns Protein kinases ATP-binding region signature. 400 422 IPR017441 GO:0005524
Viun8g01520 711 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Viun8g01520 711 Gene3D Phosphorylase Kinase; domain 1 371 468 - -
Viun8g01520 711 FunFam serine/threonine-protein kinase PBS1-like 366 468 - -
Viun8g01520 711 PANTHER RUST RESISTANCE KINASE LR10-RELATED 368 685 IPR045874 GO:0004672
Viun8g01520 711 SMART serkin_6 394 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01520 711 ProSiteProfiles Protein kinase domain profile. 394 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01520 711 Gene3D Transferase(Phosphotransferase) domain 1 469 673 - -
Viun8g01520 711 FunFam PR5-like receptor kinase 469 676 - -
Viun8g01520 711 SUPERFAMILY Protein kinase-like (PK-like) 380 665 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01520 Viun-Chr8 25147884 25162805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01520 11 677 Receptor kinase-like Gene Family AT1G66910 32.656 2.98e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01520 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01520 - - gmx:100170745 814.683