Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01519 ATGTCTGTTTTACCTTGTTGTAATCGCTGCACGCAATCAGTGGTTGTCTCTGTGTTCACCATTCTTGTGCTGTTCCACCAAACTTGCTGTGCTAAGCATCGCGCATCCTGTCCATCTTCTTCGTGCGGCGAAATTCACGAAATAAAACATCCATTCCGACTGAAAGACGACCCTCGAGATTGCGGCCTTCCCGAGTATGAATTTGATTGCGTGAATAACAGACCATTAGTTACACTGTTTTCAGGGAAATACTTTGTGGAAGAAATCAATTACGATAGGTACCAAATCCGACTGATTGATCCGGGTGTTGTGGAGGACACTTCTTGCTCTTTTCCTCGCTATTTCTTATCCACACAAAATTTCAGTGGATATGACGATGATCTGCTGGCTACGTTGTCTGGGGAGGACTATGAGTCTGAGACTGCCAAAGTAGCGTTTGGGGAGAATGTGTATGAGCCTGCAAAAGTGGTGTTTCTAAATTGTAGTGATCGAGTGAGTGATGATCCTCGATATGTGGAAGTGAAATCCGGCGGTTGTGATTCCGGAGGCTATATCTACGCCGTTGTGGATCGCGGTAAGAAGTTTCATCCGGAATTTACAGTGATGGACGTGAAGGCAGGGTGCAGTTTAAAGGTTGCTACCTTCGCAAACTGGACACATGGTGTTTCCTATAGAGAGTCGACAGATAACAGGAACGTTTCCTATGCTGATATCCTTAAATCTCTGGAAAAGGGATTTTGGTTGACTTGGTTACCACTTGTTTGTAGGGATCACTGTGGAAATGGTATCTCTTGCATCCTCAATCAAACCACACAAGAAATTCAGTGCATTGGTTGTCTTAGGATGAACTACTATGGCAGCAATTGTGGTTTTTTTGTTGGTATTATAAAAGGATTTCTTCATACAATAAAAATCGTCAAACGATCATCACCGTATTGGAATATTGAGGGAGAATTTATAGGCGATGTAATTCTACCAATATTTATAGCAGCTAGATATTTATTCATAGTCCTACTTTTTCTAGTGCTAATCATCTATAAATGGCGTAAAAGACATTTTTCAATGTTTGAAAACATTGAAAAGTTTTTGTTAGACAACAATATAAATCCAATTAGATACGAGTACAAAACGGTCAAGAAAATAACTAGAGGTTTTAAAGTGAAGTTAGGAGAAGGAGGTTTTGGTTGTGTGTACAAAGGAAAGCTTCGAAGTGGGTTAGATGTTGCAGTAAAGATGTTGAGCAAATCTAAGAATAATGGACAAGAGTTTGTTAATGAAGTAGCTAGCATCGGAAGAATACATCATGTGAATGTAGTAGGTCTTATTGGATATTGTGTTGAAGGAAAAAATCGTGGCTTGATTTATGAATACATGTCTAATGGGTCATTGGATAAATATATTTTCTCTAAAGAAGGAAGTGTTCTTCTAAGTTATGAGAAGATTTATGAAATATCTCTTGGAATTGCTCATGGGATAACATATTTACATCGAGGTTGTGATGTGCAAATTTTACATTTCGATATTAAGCCTCATAATATTCTTTTAGACGATAACTTTACTCCAAAGGTTTCAGATTTTGGGCTTGCAAAGTTGTATCCTACAAAGGATGGATCCATTATTTTGACTGCAATAAGAGGAACATTGGGTTACATGGCTCCAGAATTATTCTACAAAAATGTAGGTGGAGTTTCTTATAAAGCCGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTAGGAGGAAAAATTCAAATCCTCTTGCGGAACATTCAAGCCAACATTATTTTCCATTTTGGATCCATGATCAATTTAAAGAAGAGAAAGATATTGACATGAAAGATGCTTCAGAAACGGATAAGATTTTGATGAAAAAAATGTTCATAGTTGCACTTTGGTGTATACAATTCAAACCAAGTGATCGTCCATCAATGAGCAAGGTTGTAGAGATGCTTGAAGGAAAAGTTGAAACTCTTGAAATTCCTCCCAAACCTTCTTTTTATCTTCATGAAATATTAGAACATGATGGTACAATCAACTCATGGAGTGATTCAACTAGTTCTAATGTGAATGTTGATACAAACATGCCTAATCACTAG 2103 0.3761 MSVLPCCNRCTQSVVVSVFTILVLFHQTCCAKHRASCPSSSCGEIHEIKHPFRLKDDPRDCGLPEYEFDCVNNRPLVTLFSGKYFVEEINYDRYQIRLIDPGVVEDTSCSFPRYFLSTQNFSGYDDDLLATLSGEDYESETAKVAFGENVYEPAKVVFLNCSDRVSDDPRYVEVKSGGCDSGGYIYAVVDRGKKFHPEFTVMDVKAGCSLKVATFANWTHGVSYRESTDNRNVSYADILKSLEKGFWLTWLPLVCRDHCGNGISCILNQTTQEIQCIGCLRMNYYGSNCGFFVGIIKGFLHTIKIVKRSSPYWNIEGEFIGDVILPIFIAARYLFIVLLFLVLIIYKWRKRHFSMFENIEKFLLDNNINPIRYEYKTVKKITRGFKVKLGEGGFGCVYKGKLRSGLDVAVKMLSKSKNNGQEFVNEVASIGRIHHVNVVGLIGYCVEGKNRGLIYEYMSNGSLDKYIFSKEGSVLLSYEKIYEISLGIAHGITYLHRGCDVQILHFDIKPHNILLDDNFTPKVSDFGLAKLYPTKDGSIILTAIRGTLGYMAPELFYKNVGGVSYKADVYSFGMLLMEMASRRKNSNPLAEHSSQHYFPFWIHDQFKEEKDIDMKDASETDKILMKKMFIVALWCIQFKPSDRPSMSKVVEMLEGKVETLEIPPKPSFYLHEILEHDGTINSWSDSTSSNVNVDTNMPNH 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01519 700 PANTHER RUST RESISTANCE KINASE LR10-RELATED 357 674 IPR045874 GO:0004672
Viun8g01519 700 Gene3D Phosphorylase Kinase; domain 1 360 457 - -
Viun8g01519 700 SMART serkin_6 383 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01519 700 Pfam Protein kinase domain 387 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01519 700 FunFam PR5-like receptor kinase 458 665 - -
Viun8g01519 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Viun8g01519 700 Gene3D Transferase(Phosphotransferase) domain 1 458 662 - -
Viun8g01519 700 SUPERFAMILY Protein kinase-like (PK-like) 369 654 IPR011009 -
Viun8g01519 700 FunFam serine/threonine-protein kinase PBS1-like 355 457 - -
Viun8g01519 700 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Viun8g01519 700 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Viun8g01519 700 ProSiteProfiles Protein kinase domain profile. 383 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01519 Viun-Chr8 25147884 25162805 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01519 11 666 Receptor kinase-like Gene Family AT1G66910 32.551 2.59e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01519 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01519 - - gmx:100170745 804.283