Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01517 ATGACCAGACGTTCATTACCGGTCGAGAATGATTTGGGAGAAGTTATAGGTCAAGATATTCTACCAATATTCATAATAGCTAGATATTTATTTATATTTTCACTTTTGTTAGTGCTAATCATCTATAAATGGCGAAGAAGACATTTTTCAATGTATGAAAACATTGAAAATTTTTTGTTAGAAAACAACATAAATCCCATTAGATATGAGTATCGAGCGGTGAAGAAAATGACTAAAGGTTTCAAAGTGAAGTTAGGAGAAGGAGGTTTTGGTTGTGTGTACAAAGGAAAGCTTCGAAGTGGGTTAGATGTTGCTGTAAAGATGTTGAGCAAATCCAAAGATAATGGACAAGAATTTGTAAATGAAGTAGCTACCATTGGAAGAATACATCATGTGAATGTAGTAAGTCTTATTGGATATTGTGTGGAAGGAAAAAAACGTGGTTTAATTTATGAATACATGTCTAAGGGGTCATTGGATCAATATATTTTCTCTAAAGAAGGAAGTGTTCCTCTAAGTTATGAAAAGATATATGAAATATCTCTTGGGATTGCTCATGGGATATTATATCTACATCGAGGTTGTGATGTGCAAATTTTACATTTCGATATCAAGCCTCATAATATTCTTTTAGATGATAACTTTATTCCAAAGGTTTCAGATTTTGGACTTGCAAAGTTGTATCCTACAAAAGATGGATCCATTATTTTGACTACAATAAGAGGAACATTGGGTTACATGGCTCCAGAATTATTCTACAAAAATGTAGGTGGAGTTTCTTATAAAGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATAACAAGTAGGAGGAAAAACTCAAATCCTCTTGCACAACATTCAAGTCAACATTATTTTCCTTTTTGGATTCATGATCAATTTAAAGAAGAAAAAAATATTGACATGAAAGATGCTTCAGAAATGGATAATATTCTCATGAAAAAAATGTTCATAGTTGCACTTTGGTGTATACAATTCAAACCAAGTGACCGTCCATCAATGAGCAAGGTTATAGAGATGCTTGAAGCAAAAGTTGAAACTCTTGAAATTCCTCCAAAACCTTCATTTTATCTTCATGAAATATTAGAGCATGGTGGTGCAATCTACTCTGATGAAACACCATGGAGTGATTCAATTAGTTCTAATGTGAATGTCGATACAAATATGCCTAATAAGTAA 1203 0.3242 MTRRSLPVENDLGEVIGQDILPIFIIARYLFIFSLLLVLIIYKWRRRHFSMYENIENFLLENNINPIRYEYRAVKKMTKGFKVKLGEGGFGCVYKGKLRSGLDVAVKMLSKSKDNGQEFVNEVATIGRIHHVNVVSLIGYCVEGKKRGLIYEYMSKGSLDQYIFSKEGSVPLSYEKIYEISLGIAHGILYLHRGCDVQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPTKDGSIILTTIRGTLGYMAPELFYKNVGGVSYKADVYSFGMLLMEITSRRKNSNPLAQHSSQHYFPFWIHDQFKEEKNIDMKDASEMDNILMKKMFIVALWCIQFKPSDRPSMSKVIEMLEAKVETLEIPPKPSFYLHEILEHGGAIYSDETPWSDSISSNVNVDTNMPNK 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01517 400 PANTHER RUST RESISTANCE KINASE LR10-RELATED 52 367 IPR045874 GO:0004672
Viun8g01517 400 SUPERFAMILY Protein kinase-like (PK-like) 64 350 IPR011009 -
Viun8g01517 400 FunFam PR5-like receptor kinase 154 361 - -
Viun8g01517 400 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Viun8g01517 400 Gene3D Transferase(Phosphotransferase) domain 1 154 358 - -
Viun8g01517 400 FunFam serine/threonine-protein kinase PBS1-like 50 153 - -
Viun8g01517 400 Gene3D Phosphorylase Kinase; domain 1 55 153 - -
Viun8g01517 400 Pfam Protein kinase domain 83 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01517 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Viun8g01517 400 ProSiteProfiles Protein kinase domain profile. 79 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01517 400 SMART serkin_6 79 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01517 Viun-Chr8 25133311 25134543 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01517 27 381 Receptor kinase-like Gene Family AT4G18250 42.582 1.32e-99 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01517 PK_Tyr_Ser-Thr 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01517 - - var:108336466 636.721