Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01510 ATGAATCAAAACCAGCTTCAGCCTCTGCCTCTGCTTAGTAGCTTCCTAGGTTCATCACCCCAAGAATCTTTGCTACAAAACCAAAATCCTAAACCACAACATCATGGTCAAGTTGAGGATGTCACTGTGGCCTTACACATAGGCCTCCCCAACAATTCAAGTGCTGGTTCCACCAATGATCATGGATTGGTGAATGCCACAACTCATGCTCCTACCAATTACTGGATTCCAACTCAAGAACAGATCCTCATTGGGTTCAGCCATTTCTCTTGTCCCGTCTGCTTCAAAACCTTCAATCGCTACAACAATCTTCAGATGCATATGTGGGGGCACGGGTCACAGTATCGCAGAGGACCAGACTCGCTGAAGCGAACCCATCCACGACCGTTGTTGGACATTCCCTGCTACTGTTGCTCGAGAGGGTGCAAGAACAACATCGAGCACCCACGTGCGAAGCCACTGAAGGACTTTCGCACGCTTCAGACGCATTTCAAGAGGAAGCATGGCGCCAAGCCCTTTACGTGCCGCAAGTGCGCAAAGCCTCTGGCCGTGAAAGGTGACTGGCGAACCCACGAGAAGAATTGCGGCAAACGCTGGCTCTGCATTTGTGGCTCCGACTTCAAACATAAGAGATCCCTCAAAGACCACATTAAAGCCTTTGGCTTTGGTCACACCCCTTTCACTTCTTCTTCTGATGCCATGTAG 705 0.4979 MNQNQLQPLPLLSSFLGSSPQESLLQNQNPKPQHHGQVEDVTVALHIGLPNNSSAGSTNDHGLVNATTHAPTNYWIPTQEQILIGFSHFSCPVCFKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSRGCKNNIEHPRAKPLKDFRTLQTHFKRKHGAKPFTCRKCAKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHTPFTSSSDAM 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01510 234 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Viun8g01510 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Viun8g01510 234 PANTHER ZINC FINGER PROTEIN WIP2 9 228 IPR043584 GO:0003700|GO:0010468
Viun8g01510 234 SUPERFAMILY beta-beta-alpha zinc fingers 84 111 IPR036236 -
Viun8g01510 234 Gene3D Classic Zinc Finger 88 111 - -
Viun8g01510 234 FunFam Zinc finger protein WIP2 142 224 - -
Viun8g01510 234 Gene3D Classic Zinc Finger 151 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01510 Viun-Chr8 25002174 25003575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01510 1 227 C2H2 Transcription Factor Family AT1G34790 58.800 1.58e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun8g01510 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01510 - - var:108336851 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01510 8 25002174 25003575 Viun8g01510 8 25002174 25003575 ECH