Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01500 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGAGATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTGCTGATCCAAACCCAGTGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTCGGAAGACCTAGACCATCACCACCAAGAGGAAGAGGTACATTCCAAGGAGGAGCACCAGGAACAGTTTCATACAGTGGTGTGCCGGCGGCAGGACCGCCGGCACTAGCACCGCAGCCGCCGCCGCCACCACCACCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCATCAAGCCACATTGTATAACCCACAAATTCAGCAACCACAATACTACCAACAACTCTATGGACCATCCTCCTCCACCATGGGTTCCCCTTATTACTATGGCTATTCTGTGCAAGCACCAAGAAGTACCTTTTCCTCACCCCAACCACATCGTTTACCAGCTGGACCCTCTTATCTATACTACCCTACACCCATGGAACCCTCATTTTCTGCATATCGTCCACCACCTCAGTTGCAACCACTTCCAATAAGGCAACCCTCTCCTTCCCCTAGTGACTCACAGACTCAGCAACGTACCTCGTCCGAGGCAGCAGGTGGAGTAGTTATAACTTCGGAAAGTTCAAATAGCCAAGGGAGGAACTGA 828 0.4952 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGAPGTVSYSGVPAAGPPALAPQPPPPPPPLVYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSVQAPRSTFSSPQPHRLPAGPSYLYYPTPMEPSFSAYRPPPQLQPLPIRQPSPSPSDSQTQQRTSSEAAGGVVITSESSNSQGRN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01500 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Viun8g01500 275 MobiDBLite consensus disorder prediction 220 275 - -
Viun8g01500 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Viun8g01500 275 MobiDBLite consensus disorder prediction 243 275 - -
Viun8g01500 275 PANTHER BOULE-RELATED 6 253 - -
Viun8g01500 275 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Viun8g01500 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Viun8g01500 275 CDD RRM_RBM24_RBM38_like 16 91 - -
Viun8g01500 275 MobiDBLite consensus disorder prediction 125 141 - -
Viun8g01500 275 MobiDBLite consensus disorder prediction 90 141 - -
Viun8g01500 275 Gene3D - 3 111 IPR012677 -
Viun8g01500 275 SUPERFAMILY RNA-binding domain, RBD 9 113 IPR035979 GO:0003676
Viun8g01500 275 MobiDBLite consensus disorder prediction 223 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01500 Viun-Chr8 24947753 24953235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01500 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 1.18e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01500 K25006 - gmx:100787086 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01500 8 24947753 24953235 Viun8g01500 8 24947753 24953235 ECH
Viun8g01500 8 24947753 24953235 Viun9g02585 9 34977696 34981904 PCT