Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01435 ATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAAAACCCCGTCAATAGACAAGTTACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCTTACGAGCTCTCAATCCTATGTGACATCGATATTGCAGTCATAATGTTTTCGCCTTCCGGTCGTGTTAACCACTTTTCTGGTCGGAGGAGAATTGAGGATGTTTTTACTCGCTACATTAATCTTCCAGACCAAGAAAGAGATAATGCTGTAAGTTTTCCAGAGATACCATACCGCAGGGGTATTCAGAACAAGGAGTATTTGCTAAGGACACTTCAGCAACTGAGGAATGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAGGCTACAACAGCAACTTCAAATGGCCGAAGAGCAGATAAGGTTATATGAACCCGACCCATTAAAGATGTCATCAATGGCAGATCTTGAAAACAGTGAAAAGCACCTTTTAGATGTCTTGACACGAGTCATGCAGAGAAAGGAATACTTAATGAGTCACCATCTATCTTCTTTTGACCCATCTAGTATTCAGGGAATACCGACCTCTTTCGACAATGTAGGTTGGTTGCAGGATGGGAGTCAAAATCATGCTCAGATTTTTGATGCATCTGCTCCGTTAGATCCTCTCAGGGACTTGTCTTCTACAGTGTATGGTTCATTTTCTCAAGGGACAAGTTCAAATGCTGCTGATCCACGAGGCATGGGAGAGTGTCATGTATCAAATCCAAGTGATGGAACCCTTCAAGCATGGCCTCAATGCTACACGTTGTATCCTCATCATCATATTCAACATGACATGGTGGGACCTGACATGCCAGATATGATGCCACACACACAAGTTAACATCCCAATCACTGCCTCACACGTGGAAGCACCCAAGAATGAACCTGTAGATTTTGACCAGTCTAAACAACAATCTCAAACTCAAACTCAAACTCATCCTCATCCTCATCAACATCAGCAACTCAATACTCAATGA 1041 0.4227 MGRVKLEIKRIENPVNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPEIPYRRGIQNKEYLLRTLQQLRNENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMADLENSEKHLLDVLTRVMQRKEYLMSHHLSSFDPSSIQGIPTSFDNVGWLQDGSQNHAQIFDASAPLDPLRDLSSTVYGSFSQGTSSNAADPRGMGECHVSNPSDGTLQAWPQCYTLYPHHHIQHDMVGPDMPDMMPHTQVNIPITASHVEAPKNEPVDFDQSKQQSQTQTQTHPHPHQHQQLNTQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01435 346 Gene3D - 15 86 IPR036879 GO:0003677|GO:0046983
Viun8g01435 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun8g01435 346 Coils Coil 119 153 - -
Viun8g01435 346 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun8g01435 346 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Viun8g01435 346 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun8g01435 346 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun8g01435 346 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun8g01435 346 FunFam MADS-box transcription factor 41 13 92 - -
Viun8g01435 346 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Viun8g01435 346 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 317 - -
Viun8g01435 346 MobiDBLite consensus disorder prediction 240 261 - -
Viun8g01435 346 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun8g01435 346 MobiDBLite consensus disorder prediction 319 346 - -
Viun8g01435 346 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun8g01435 346 MobiDBLite consensus disorder prediction 313 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01435 Viun-Chr8 23317980 23326614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01435 1 307 Type I MADS-box Gene Family AT1G22130 58.413 3.98e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun8g01435 SRF-TF 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01435 - - pvu:PHAVU_008G170400g 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01435 8 23317980 23326614 Viun8g01435 8 23317980 23326614 ECH