Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01409 ATGAACTCTTCATCGACTCAACTAGTCCTCGCGAAAAGGATGGGTATATACGATCCATTCCACCAAGTGAACATGTGGGGGGACAGCTTCAAAATTGATGGAAGCTTGAATTCAATTGCTACACCAATGTTCATGATGAAGCCAAGCATGCAGAACAAGTCTGAATGTACTCCTCATGAATCAAGGGAACCTTCTGGAGATGATCAAGACAGTAATGAGAAACCTGATAGAAAGGTGCTAAGACGTCAAGCTCAAAATCGTGAGGCTGCACGAAAATGTCGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAAACAAGCCGTGTGAAGCTCATGCAATTGGAGTTGGAGATTGAGAAAGCAAAAAAGCAGGGTATGTACATACGCAGTGCACCAGATGTTAGTTATATGGGATCATCCGGAACAATTAACCCAGGGATAACCTTGTTTGAACTTGAATATGGACAATGGATTGAAGAGCTCGATAGACAAAATGAAGAACTGAGAAATGCCTTACACACTCGTGAATCTGATATGCAGCTTCATCTACTTGTTGAGAGTTGCTTGAGCCACTACGCAAATCTTTTCAGGATCAAAGCAGAGGCAGCAAAAGCAGATGTCTTTTACTTGATCTCTGGCGCATGGAAAGCATCAGTGGAACGCCTTTATCTTTGGATTGGAGGATCCCGTCCATCACAGCTTCTAAATATTATTGTACCACAGCTTGAGCCTTTGACTGATCAACAAATTGTGAGTATTAACAACCTCCGGCTTTCATCTCAGCAAGCTGAAGATGCCCTTTCACTTGGATTGGACAAACTCCAGCAGAGTCTAGTCCACAACATTCCATCAGATCCCTTAATTATAGGACACTACGGCTTTGAGATGGCTGCTGCAATGGACAAAGGTGAAGCACTAGAAGGTTTTGTAAACCAGGCAGATCACCTTAGGCAGCAAACTCTGCTTTACATGTCAAGGATTCTGACAACTGGGCAAACTGCTCAAGGCTTGGTGGCTATGGGAGAATACTTCCATCGTCTTCGCACTCTTAGTTCTTTATGGACTGCTCATTCATGCGATCCTTCCTTTCCCACTCACCTCTCAAACTGA 1110 0.4369 MNSSSTQLVLAKRMGIYDPFHQVNMWGDSFKIDGSLNSIATPMFMMKPSMQNKSECTPHESREPSGDDQDSNEKPDRKVLRRQAQNREAARKCRLRKKAYVQQLETSRVKLMQLELEIEKAKKQGMYIRSAPDVSYMGSSGTINPGITLFELEYGQWIEELDRQNEELRNALHTRESDMQLHLLVESCLSHYANLFRIKAEAAKADVFYLISGAWKASVERLYLWIGGSRPSQLLNIIVPQLEPLTDQQIVSINNLRLSSQQAEDALSLGLDKLQQSLVHNIPSDPLIIGHYGFEMAAAMDKGEALEGFVNQADHLRQQTLLYMSRILTTGQTAQGLVAMGEYFHRLRTLSSLWTAHSCDPSFPTHLSN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01409 369 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 111 IPR004827 GO:0003700|GO:0006355
Viun8g01409 369 Coils Coil 158 178 - -
Viun8g01409 369 PANTHER TRANSCRIPTION FACTOR TGA9 2 358 - -
Viun8g01409 369 MobiDBLite consensus disorder prediction 50 91 - -
Viun8g01409 369 MobiDBLite consensus disorder prediction 56 90 - -
Viun8g01409 369 FunFam BZIP family transcription factor 77 126 - -
Viun8g01409 369 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Viun8g01409 369 SUPERFAMILY Leucine zipper domain 80 111 IPR046347 GO:0003700|GO:0006355
Viun8g01409 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Viun8g01409 369 Pfam bZIP transcription factor 77 113 IPR004827 GO:0003700|GO:0006355
Viun8g01409 369 Pfam Seed dormancy control 166 239 IPR025422 GO:0006351|GO:0043565
Viun8g01409 369 SMART brlzneu 73 134 IPR004827 GO:0003700|GO:0006355
Viun8g01409 369 Coils Coil 97 124 - -
Viun8g01409 369 Gene3D - 77 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01409 Viun-Chr8 22341155 22345496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01409 2 362 Calmodulin-binding Proteins AT1G77920 54.400 5.92e-135 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun8g01409 DOG1 7.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01409 K14431 - gmx:100775882 664.07