Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01405 ATGCCTCTGCCGCAGTCTCCGCCGAAGCCTCGCCGCGTCGATCCCAAAATCTGGCGAGCTTGCGCCGGCGCCGCTGTGCATATCCCGAAGCTGCATTCTAGGGTTTACTACTTCCCGCAGGGCCACATGGAGCATGCTTCTCCGTCACATTCGCTCTCCCCTCCCTTCCGTTCCCTCCCCTTCGTTCCCTGCCTTGTGTCCTCCCGTGATTTGCTCGCTGATCCGTTCTCCGACGAGGTCTTCGCCAGGCTCCTCCTCACTCCACTCCCTCACCCGTTCCACCACAGCAACCAGAACGACGACAGCAACAGCCAAACCGACGACGAGGAGCGCGAGTGCCAAAACGGCGTCGTTTCGTTCTCCAAAATCCTCACGCCCTCCGACGCCAACAACGGCGGTGGCTTCTCTGTGCCGCGCTTCTGTGCCGACTCTGTCTTCCCTCCGCTCGATTTCCGCGCCGATCCTCCGGTCCAGCTCCTCTCCGTCACTGACGTCCACGGCGTCGCGTGGCGGTTTCGGCACATCTACCGCGGTACTCCACGTCGGCACCTCTTCACCACTGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCATCGCCGGCGATTCCGTTGTCTTCGTCAAGGACTCCGACGGGAACGTCTCAGTCGGGATCCGCCGTGCGACGCGGTTCGTCACCTCTTCCTCTCCCGTGGAGGAGGATCAGCCGCCGACGCAGGGGGAGGGGTTTTCGCGAAGCGCTACCGGGAGATTATCGCCGAAGGCTGTGGTGGCCGCAGTGGAGTGCGTTGCGCGGAACGCGCCATTTGAGGTGGTGTATTATCCGAGAGCGGGTTTTGCGGATTTTGTGGTGAGTGCTGAGGTTGTGGAGGACGCGATGAGGTGCGCGTGGGCTGGTGGAATGAGAGTGAAGATAGGAATGGAGACTGAGGATTCTTCTAGGATGACGTGGTTTCAAGGGACGGTGACTTCTGCCTATGCCTCTGATAATGGACCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAGTCTTGCAAAATGCAAAGCGAGTCAGTCCTTGGCAGGTTGAACTTGTTTCCCCCTCACTTGCCCTTCATACAGCGTTTTCCCCTTCAAAAAGGTTTAGAGCTGACCAGGGATCTGGACTGTTAAGTGATAGGGAGGGAGACCCCTTCTTTCCTGTGACAGGTTTCCCTAACTCTATGGGAAACATGGATAAAAAATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCAAGTTTTTCCAACTTTTTAAACGATAACTCTTATCTGTACATGGGTAGTAGTTCCTTTGGGAACAATACAGTACAAAGTTTGGGAATTGTTTCTACAGAGCTAAACATTAGCAGTTCTCAATCAGATGACCTGTCACCACATAGCCAGAGTAGTTTACATTCCTTTGACACAGAGTTTACTGGGACCAGGCACTGCAACACCAAAGTTGGTTCTGGTTCAATCCTGCTATTTGGTAAGATCATACAGCCTGCTGAAAGTCATTTGCATGATGCTGCTGATTACATAGAGCGTGATGGCAGCGGGGGCAGCAAAGAAACTGAAGACAGTTGA 1623 0.5428 MPLPQSPPKPRRVDPKIWRACAGAAVHIPKLHSRVYYFPQGHMEHASPSHSLSPPFRSLPFVPCLVSSRDLLADPFSDEVFARLLLTPLPHPFHHSNQNDDSNSQTDDEERECQNGVVSFSKILTPSDANNGGGFSVPRFCADSVFPPLDFRADPPVQLLSVTDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFVKDSDGNVSVGIRRATRFVTSSSPVEEDQPPTQGEGFSRSATGRLSPKAVVAAVECVARNAPFEVVYYPRAGFADFVVSAEVVEDAMRCAWAGGMRVKIGMETEDSSRMTWFQGTVTSAYASDNGPWRMLQVNWDEPEVLQNAKRVSPWQVELVSPSLALHTAFSPSKRFRADQGSGLLSDREGDPFFPVTGFPNSMGNMDKKLLSYDTFPAGMQGARHDLFSASSFSNFLNDNSYLYMGSSSFGNNTVQSLGIVSTELNISSSQSDDLSPHSQSSLHSFDTEFTGTRHCNTKVGSGSILLFGKIIQPAESHLHDAADYIERDGSGGSKETEDS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01405 540 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Viun8g01405 540 MobiDBLite consensus disorder prediction 226 247 - -
Viun8g01405 540 SUPERFAMILY DNA-binding pseudobarrel domain 114 227 IPR015300 -
Viun8g01405 540 MobiDBLite consensus disorder prediction 92 112 - -
Viun8g01405 540 FunFam Auxin response factor 118 222 - -
Viun8g01405 540 SMART B3_2 120 222 IPR003340 GO:0003677
Viun8g01405 540 Pfam Auxin response factor 259 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun8g01405 540 Gene3D - 297 364 - -
Viun8g01405 540 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Viun8g01405 540 CDD B3_DNA 119 220 IPR003340 GO:0003677
Viun8g01405 540 MobiDBLite consensus disorder prediction 226 246 - -
Viun8g01405 540 Gene3D - 117 222 IPR015300 -
Viun8g01405 540 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 512 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01405 Viun-Chr8 22233120 22237346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01405 11 538 B3 DNA Binding Superfamily AT1G77850 48.673 1.75e-162 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun8g01405 B3 2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01405 - - gmx:100804933 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01405 8 22233120 22237346 Viun8g01405 8 22233120 22237346 ECH
Viun8g01405 8 22233120 22237346 Viun9g02498 9 34103458 34107551 PCT