Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01396 ATGAATCACCTACCTCGACTATTCGGCAATAGAAAGAAGCCTCCAAACATGGACCCCAAGAAGAGCAAGACGCGAGGCAAGAAGCAGCAGCCCAAGCTTGAGCGCCGCAACGCCGCCAAGCACTTCGAATACGACGCCGGATCGTCGTCTTCATTGCGAGGTGACTCCGCATCCGTTTCCACGTCGTCTTCCTCGTCGTCTTCGTTATATACGCGCTCCATGGACTTCTACGGCCACAGGAGCTTCAGAATCGAGGGCGTGGAGGGCGAGTTCGACCGGATTTGCCAAAGCCTCGGCCTCTCCGGCCCGGAGGACTTCTCCATTCCGACCGCCGCCTGGGAGGCCATGAAGCTCCGCTCCTCCTCCAACACCCCGTCGCGCCGGAACCACGACGAGAAGGCGTTCGACGAGGAGGCGAAGGAGAAGGAGGAAATTGAAGTGGTTGAGAGCGAGGATGGGGTTAGGGTTTTGGATGAGTGTGTTGTTCCTGTTGAGAGTAGTGGTTGCTGCACCGCTGGCGGCGGAGGAATTAAGGGTTTTCGACCTCCGATGCTGAAGCCGCCGCCGGGGATTAGGGTTTCGGTGGTGGACGAAACGAGTTCCACATGGGATTTGTTGCGGGATTTTGCGCCGAAAGGGGAGGAAGGGAAGGAGAGTTACTTGGAGTTGAGTGCTGCTGATGAAGATGAGGATAGAGAAGAAAAGGAAGAGGAGGATGAGGAAGAAGGGGAAGTTGGTGGAGTGAGGGTGGAGAGAGAAGAGGAGGAAAGCGCGGCGAGTATTGCGGATATTGTGGATGAGTTTTCTGGGTTTTCTACTTCGAACGAAGATGATTCTTCCAGCACTACTACGGGTCCTAATTCTAGTAATATATCTCCTAATGGGAGAATCAAGCGTGTGATTACCGCGGGTAACTGGCAGAAGGGTGAGCTTTTGGGGCGTGGCTCGTTTGGCTATGTCTATGAAGGGATTTCTGAAGATGGATTCTTTTTTGCTGTAAAACAAGTTTCACTACTTGATCAGGGGAATCAGGCAAGGCAAAGTGTATATCAACTGGAACAGGAAATTGCACTTTTGAGTCAATTTGAACACGAGAATATAGTTCAATACTTTGGCACTGAAATGGATGCGTCAAATCTGTATATCTTTATTGAGCTTGTAACTAAAGGTTCCCTTAGAAATCTCTACCAGAGATATACTCTTCGAGATTCTCAAGTATCTGCTTATACAAGGCAGATTTTGCATGGTTTAAAGTATCTCCATGATCGGAACATTGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCAAATGGATCTGTTAAGCTTTCAGATTTTGGATTGGCGAAGGCAATCAAATTGAATGATGTCAAATCATGCAAGGGAACAGCATTCTGGATGGCCCCAGAGGTTGTAAAAGGTAAACAAAATGGTTACGGGCTTCCAGCTGATATATGGAGTCTGGGATGTACTGTGTTAGAGATGTTAACTGGCCAATTTCCTTACTCTCACTTAGAATGTATGCAGGCATTGTTTAGAATTGGAAGAGGGGAGCCCCCTATTGTGCCAGATTCCCTTTCAAGAGATGCACAGGATTTTATCCTGCAGTGTCTCAAAGTTAATCCAGATGAACGTCCCAGTGCTGCTAAACTCCTAAATCATACCTTTGTCCAACGACCGCTACTTTCCCAGACCTCTGGTTCTGCATCTCCTTATATTCGAAGGGGTTAA 1737 0.483 MNHLPRLFGNRKKPPNMDPKKSKTRGKKQQPKLERRNAAKHFEYDAGSSSSLRGDSASVSTSSSSSSSLYTRSMDFYGHRSFRIEGVEGEFDRICQSLGLSGPEDFSIPTAAWEAMKLRSSSNTPSRRNHDEKAFDEEAKEKEEIEVVESEDGVRVLDECVVPVESSGCCTAGGGGIKGFRPPMLKPPPGIRVSVVDETSSTWDLLRDFAPKGEEGKESYLELSAADEDEDREEKEEEDEEEGEVGGVRVEREEEESAASIADIVDEFSGFSTSNEDDSSSTTTGPNSSNISPNGRIKRVITAGNWQKGELLGRGSFGYVYEGISEDGFFFAVKQVSLLDQGNQARQSVYQLEQEIALLSQFEHENIVQYFGTEMDASNLYIFIELVTKGSLRNLYQRYTLRDSQVSAYTRQILHGLKYLHDRNIVHRDIKCANILVDANGSVKLSDFGLAKAIKLNDVKSCKGTAFWMAPEVVKGKQNGYGLPADIWSLGCTVLEMLTGQFPYSHLECMQALFRIGRGEPPIVPDSLSRDAQDFILQCLKVNPDERPSAAKLLNHTFVQRPLLSQTSGSASPYIRRG 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01396 578 Pfam Protein kinase domain 307 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01396 578 MobiDBLite consensus disorder prediction 224 244 - -
Viun8g01396 578 Gene3D Transferase(Phosphotransferase) domain 1 303 574 - -
Viun8g01396 578 MobiDBLite consensus disorder prediction 124 147 - -
Viun8g01396 578 FunFam Mitogen-activated protein kinase 1, putative, expressed 304 572 - -
Viun8g01396 578 SMART serkin_6 306 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01396 578 ProSiteProfiles Protein kinase domain profile. 306 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01396 578 MobiDBLite consensus disorder prediction 245 259 - -
Viun8g01396 578 MobiDBLite consensus disorder prediction 214 295 - -
Viun8g01396 578 MobiDBLite consensus disorder prediction 119 147 - -
Viun8g01396 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Viun8g01396 578 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 22 573 - -
Viun8g01396 578 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Viun8g01396 578 MobiDBLite consensus disorder prediction 267 295 - -
Viun8g01396 578 MobiDBLite consensus disorder prediction 49 70 - -
Viun8g01396 578 SUPERFAMILY Protein kinase-like (PK-like) 289 565 IPR011009 -
Viun8g01396 578 MobiDBLite consensus disorder prediction 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01396 Viun-Chr8 21956557 21968627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01396 32 563 MAP Kinase Kinase Kinase AT4G08500 52.041 1.82e-175 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun8g01396 Pkinase 5.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01396 K13414 - gmx:100804388 829.706