LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g01386	ATGCGGCATTCGATGGAAGAGAACCCTAACCTCTCTCTCACGCGCGATTCTTCCCCTTCCTCTCCGGAATTCTTCAAACAAGTCCAAGCTGCTCTCAAGCGCCACCGCCCTCTCGCCGTTAATGCCTCTTCAGCTTCAACGCAATTGCATACCTTGAGGCCACGGCGCTCCATGGTGGCGCACCGAAACATCGCGAACAAGTCCCAAGAGGAACATCCGTCGATTTCGGACACCTGCACCGGGGATGGTTGCAAGAACGAACCCTCTCTGCCGGTGGAATCTCATAGTGTTGGTGCGCACAAGAAGGTTCGTTTTTCAACTGAGAGTAACAATGCCACTTCACAGCCGCATGGTGCGGCGTCAATTGGATTCAGTCAACATGTGAAACACCACAATATGCAGCAGGCAGAGTCTGAGACTAGTTTGTTATCTGAGGGAGGCAAGAGTTCTCTGCTTCCAAGGAGAAGAATAGTTACTCAGGATCATCTCCAGCAATTCAAAAACTTTTTGAGTCAACCAGCTACACAATCTTCCGTAGTGGGATTGCCATGCCCTACAACTACATCAGTCCATTCAACTTCAGCTCCAATGCCGAATTCTTTAACTCATTGTGCTAATTCCTGTATGGATAGTGACTCACAAGTGGCTGCAGAACCTTATGATAACCTGAATGTCAATCCTCATTCTATAACACAAGGGGGTGCCAAATCACCATATGATTCTCTGAAAGACACCAATAGAATGTCAATTGATCAGGTGGCAAGTGCAGTTCAAGAATATAATTCACTAAATGATGCAAAGTTGACATTTAAGCACAGTGATCCATCTAAGGAGCAACAAGGATGTTTGCTAAAGGAAACTAGTAAATATACTTGTTGTAATGACATGTTAAATAACGGGGATGAGCCTGCAGCTGTTACCAACATAGTGCCTCAGGGTCTGACTTCATCTTCAGATACGAAGCTGGAATCTTCTAGGTTAGAAAAGCAAGAAAAAAATGCAAGTTGTAAAGGACCTTCAGTTGCTCGAAAGAGGACTTATGACCCTGAGTTGTTTTTTAAAGTCAATGGCAAGCTTTATCAAAGGCTTGGCAAGATAGGAAGTGGTGGAAGCAGTGAGGTGCACAAAGTGATTTCATCAGACTGTACTATCTATGCACTTAAAAGAATAAAACTAAAGGGTCGTGATTATGCCACAGCATACAGCTTTTGTCAGGAGATTGAGTATCTAAATAGGCTGAAAGGAAAGAATAATATTATCCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGTTTGAGGGAGTCATAAATGGCTCCTTCAGTAGTAAAGATGGTAGAGTCAAGGATGATGGGTACATATACATGGTGCTTGAATATGGGGAAATTGATTTGGCTCATATGTTGTCTCAAAAGTGGAAGGAACTAGATGGGAACAACCAGACCATAGATGCGAATTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAGGCTGTCAACACAATTCATGAAGAACGTATTGTGCATTCTGACTTAAAGCCAGCTAACTTCCTCCTTGTCAAGGGTTCATTAAAACTGATTGATTTTGGAATAGCCAAAGCAATAATGAGTGATACAACAAACATCCAACGTGATTCACAGGTTGGTACTCTAAGTTACATGTCACCAGAAGCATTTATGTGTAATGAGAGTGATGCGAGTGGAAACATCATGAAGTGTGGTCGGCCATCAGATATCTGGTCCCTTGGCTGCATTCTTTATCAAATGGTATATGGGAGAACACCCTTTTCAGATTACAAGACATTTTGGGCCAAATTCAAAGTTATAACTGATCCAAATCACGAAATTATGTACGAACCAGTTTCAAATCCTTGGCTTCTGGATCTTATGAAAAAATGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGTTGCTCCAGCATCCTTTTCTAGTTCCACCAGTTCCATGTGATCAATCTTTGTTCCAAGATCAAACCTTTAAATTGCTGCAACTTATATCTGAAACTTGCAAAAATGACCCAGAAGCATCGCAGCTCTGTCTTCAACTTCAACAGGTGCTTGATAATCCCATAGAATTAACTAGTACTCATTCATTAAACTCCCTAGACCAACAGCGTAAATTGCTATCCCGAATATCAGAACTTTGTATTCAACTACAGAAACGCTTTCCAAATTCGGATGAAGAATAG	2217	0.4213	MRHSMEENPNLSLTRDSSPSSPEFFKQVQAALKRHRPLAVNASSASTQLHTLRPRRSMVAHRNIANKSQEEHPSISDTCTGDGCKNEPSLPVESHSVGAHKKVRFSTESNNATSQPHGAASIGFSQHVKHHNMQQAESETSLLSEGGKSSLLPRRRIVTQDHLQQFKNFLSQPATQSSVVGLPCPTTTSVHSTSAPMPNSLTHCANSCMDSDSQVAAEPYDNLNVNPHSITQGGAKSPYDSLKDTNRMSIDQVASAVQEYNSLNDAKLTFKHSDPSKEQQGCLLKETSKYTCCNDMLNNGDEPAAVTNIVPQGLTSSSDTKLESSRLEKQEKNASCKGPSVARKRTYDPELFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKRIKLKGRDYATAYSFCQEIEYLNRLKGKNNIIQLIDYEVTDKALFEGVINGSFSSKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGNNQTIDANWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDASGNIMKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHEIMYEPVSNPWLLDLMKKCLAWDRNERWRIPQLLQHPFLVPPVPCDQSLFQDQTFKLLQLISETCKNDPEASQLCLQLQQVLDNPIELTSTHSLNSLDQQRKLLSRISELCIQLQKRFPNSDEE	738

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g01386	738	MobiDBLite	consensus disorder prediction	128	148	-	-
	Viun8g01386	738	FunFam	serine/threonine-protein kinase mph1 isoform X1	474	656	-	-
	Viun8g01386	738	Gene3D	Phosphorylase Kinase; domain 1	353	437	-	-
	Viun8g01386	738	Gene3D	Transferase(Phosphotransferase) domain 1	474	656	-	-
	Viun8g01386	738	MobiDBLite	consensus disorder prediction	7	22	-	-
	Viun8g01386	738	MobiDBLite	consensus disorder prediction	69	83	-	-
	Viun8g01386	738	FunFam	serine/threonine-protein kinase mph1 isoform X2	353	440	-	-
	Viun8g01386	738	CDD	PKc_Mps1	358	653	IPR027084	-
	Viun8g01386	738	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	507	519	IPR008271	GO:0004672\|GO:0006468
	Viun8g01386	738	ProSitePatterns	Protein kinases ATP-binding region signature.	366	388	IPR017441	GO:0005524
	Viun8g01386	738	MobiDBLite	consensus disorder prediction	128	147	-	-
	Viun8g01386	738	MobiDBLite	consensus disorder prediction	64	98	-	-
	Viun8g01386	738	MobiDBLite	consensus disorder prediction	315	340	-	-
	Viun8g01386	738	SUPERFAMILY	Protein kinase-like (PK-like)	354	662	IPR011009	-
	Viun8g01386	738	PANTHER	MIXED LINEAGE PROTEIN KINASE	58	685	-	-
	Viun8g01386	738	MobiDBLite	consensus disorder prediction	1	22	-	-
	Viun8g01386	738	ProSiteProfiles	Protein kinase domain profile.	360	653	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g01386	738	SMART	serkin_6	360	653	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g01386	738	Pfam	Protein kinase domain	360	653	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g01386	Viun-Chr8	21611260	21622764	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g01386	326	654	MAP Kinase Kinase Kinase	AT4G08470	28.818	3.60e-24	104

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Viun8g01386		Pkinase	6.9e-56	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g01386	K08866		-	gmx:100816674	1194.49