Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01374 ATGGCGAGCTTACTAAGCTCATCACCCATAGGCGCAGTCATGGACGACCCTGATTTCCTCGACTTTTCCAATCGCAGCATCACTACCAGTTCTTCCTCCGAGGAAGACTGGACCAACATGTGGTCCCCTCTCGTCGATTGGGGATCCCTGGCCGCCGGCGAAGACAATTTTCAAACCCTCATTGATTCCATCGTCCACGAAGAAGACGTCGTTTTGACCCCAGATCAAACCACACCCCAAGACTCCGACTTAAGTAGCCATGACGAGAAGGGCCTCCGCCTGGTGCACCTCCTCATGGCGGCGGCGGAGGCCCTCACCCCCGGCACCGAGAGCCACTACCTGGCTCGAGTGATATTGGTTCGGCTCAACGAGTTGGTGTCCCCCACCCACGGCACCAACATCGAAAGACTCGCGGCGCACTTTGGCAGCGCACTGCAAAATCTGCTAGATGGCACCGGGAGTGCGCACAGCATAACCACTGACGCCCCCAATCCCACGGATACGCTCACCGCGTTCCACCTTCTCCAGGACATGTCTCCTTACGTCAAGTTCGCTCACTTCACCGCCAACCAGGCCATCTTAGAGGCCGTGGCCCACGAAAAACGGGTCCACATCGTCGACTTCGACGTCACCGAAGGGGCCCAATGGGCTTCCCTAATGCAGTCCCTCTCGTCAAGAAGCACCGGCCCAACTGCCCCACACCTCCGCATCACTGCATTGTCCAGAGGCTCCGCCTCTGGACGGAGATCCATCGCCACTGTTCAGGAAACCGGACGGAGGCTAACGGCGTTCGCGGCATCCGTGGGGCAACCGTTTTCTTTTCATCAGTGTCGGTTGGACCACGGCGAAACGTTTCGACCTTCGTCACTGAAACTGATTCGCGGCGAGGCGTTGGTCTTTAACTGCATGCTGCACTTGCCGCACCTGAGCTTCCGAGCCTCAGGTTCGGTTGCTTCGTTTCTGAAAGGTGCGAAGGAGTTGAACCCGAGGGTTGTCGTGGTGGTAGAGGAAGAAGTGGCGCGCGGTGGAGATGCGGGCTTTGTCGGCCTGTTTATGGATTCACTGCAGCACTACTCGGCGGTGTTTGATTCGTTGGAGGTTGGGTTTCCCATGCAGAAATGGGCCCGGGCTTTGGTGGAGCGCGTGTTTTTGGGGCCAAGAATAGCAAACTCTATAGGCCTTATGTACCGGAGTGGGGGAGAGGACAGAGGGTCGTGGGAGGAGTGGTTGAGTGCGGCGGGGTTCAGGGGAGTTCCCGTAAGCTTCGCTAATCACTGCCAAGCGAATCTGTTATTAGGACTGTTTAACGATGGATATAGAGTAGAGGAGTTGGAGAACAATAAATTGGTGTTGGGTTGGAAATCACGACGTTTGATATCAGCCTCCGTTTGGACTTCAAACTCTTGA 1407 0.5636 MASLLSSSPIGAVMDDPDFLDFSNRSITTSSSSEEDWTNMWSPLVDWGSLAAGEDNFQTLIDSIVHEEDVVLTPDQTTPQDSDLSSHDEKGLRLVHLLMAAAEALTPGTESHYLARVILVRLNELVSPTHGTNIERLAAHFGSALQNLLDGTGSAHSITTDAPNPTDTLTAFHLLQDMSPYVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPTAPHLRITALSRGSASGRRSIATVQETGRRLTAFAASVGQPFSFHQCRLDHGETFRPSSLKLIRGEALVFNCMLHLPHLSFRASGSVASFLKGAKELNPRVVVVVEEEVARGGDAGFVGLFMDSLQHYSAVFDSLEVGFPMQKWARALVERVFLGPRIANSIGLMYRSGGEDRGSWEEWLSAAGFRGVPVSFANHCQANLLLGLFNDGYRVEELENNKLVLGWKSRRLISASVWTSNS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01374 468 ProSiteProfiles GRAS family profile. 85 465 IPR005202 -
Viun8g01374 468 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 79 461 IPR005202 -
Viun8g01374 468 Pfam GRAS domain family 94 465 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01374 Viun-Chr8 21305566 21307360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01374 92 467 GRAS Transcription Factor Family AT5G41920 35.248 6.07e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun8g01374 GRAS 2.5e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01374 - - pvu:PHAVU_008G165200g 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01374 8 21305566 21307360 Viun8g01374 8 21305566 21307360 ECH