Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01373 ATGCCACTGAACCGTGGCCAAAGCCAAACCACAAGGTGGTATCAGCTATGCTTTGTTCCCACTAGTTCAGATAGTTCAGATGACTCGGACGTAGAATCTGTAGTCATTTCTCCAAGTACTCCAACTACAACTAGTAGCACATGGCAAGAACTTTTTCCTCCTCCTCCTCCACCACCACCACCACCACCAAATCCTGAACCTCAAATTGATTGGCGTTTTCCACCACCACCACCTCCGCTACCAGATTTTGTACGGCCACTGCGGCTGCAACAACAGCATCAGCATCAGCCTGAACTCAGTGGGGCTTGGGCTATTTTTGACTTAGAAGTACAGCAAGATAGGCCTCAATCTCACAGTATAAGTCATGTGTTTGAAGGTGATAAAAGTGGGTGCTCAACGATTGCCATGAATGGCCTTAGCAGGGTAAGAGTATCAGAGATAGATAAACTCTTTCGATGTCCCATTTGCATGGATGAGTTTAAAGTGTGTGATCAAGCATACCGGTTACCCTGCACCCACACCTATTGTTCTGAATGCATTCTTCGTTGGCTTAACAGCAGCAAAACATGTCCAGTTTGCAGGCTTCAATTGAGTGGTTATAGTTTTGATAGGACAGATGATAGTAATAATAATAATAATAATTTGAACTCGCAAGTTGAATTTCTATCACCATTGCCGCCGCCGCCGCCACCACCACCACCATCAATAATATACAATGATTCTCCTCAGCGCTCGGAGTATTTCTTAGAATCTTCTCTCTACGTTACAGCAGGTGTAGAGAACAGCGCAAGTGGTAACTCAGATGAAGCTGATTATGATAGTGCATGTGATGAGCTTGGTGATTCTCAAGAAGATGGTGCTTCTCATACTGCTTCTGATACTCCAATTTAA 891 0.4433 MPLNRGQSQTTRWYQLCFVPTSSDSSDDSDVESVVISPSTPTTTSSTWQELFPPPPPPPPPPPNPEPQIDWRFPPPPPPLPDFVRPLRLQQQHQHQPELSGAWAIFDLEVQQDRPQSHSISHVFEGDKSGCSTIAMNGLSRVRVSEIDKLFRCPICMDEFKVCDQAYRLPCTHTYCSECILRWLNSSKTCPVCRLQLSGYSFDRTDDSNNNNNNLNSQVEFLSPLPPPPPPPPPSIIYNDSPQRSEYFLESSLYVTAGVENSASGNSDEADYDSACDELGDSQEDGASHTASDTPI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01373 296 MobiDBLite consensus disorder prediction 50 84 - -
Viun8g01373 296 MobiDBLite consensus disorder prediction 222 238 - -
Viun8g01373 296 MobiDBLite consensus disorder prediction 204 241 - -
Viun8g01373 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 117 197 - -
Viun8g01373 296 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Viun8g01373 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 225 IPR013083 -
Viun8g01373 296 MobiDBLite consensus disorder prediction 20 84 - -
Viun8g01373 296 Pfam Ring finger domain 152 194 IPR001841 -
Viun8g01373 296 SMART ring_2 153 193 IPR001841 -
Viun8g01373 296 ProSiteProfiles Zinc finger RING-type profile. 153 194 IPR001841 -
Viun8g01373 296 MobiDBLite consensus disorder prediction 260 296 - -
Viun8g01373 296 MobiDBLite consensus disorder prediction 20 49 - -
Viun8g01373 296 MobiDBLite consensus disorder prediction 204 221 - -
Viun8g01373 296 SUPERFAMILY RING/U-box 152 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01373 Viun-Chr8 21251135 21252311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01373 139 197 C3H Transcription Factor Family AT3G02340 45.000 3.61e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01373 - K11982 vum:124826385 370.163