Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01372 ATGGTTAAGCCAGAGATGAAGATCAACACAGAATCATCGAAGGCATTTTCCTCTTCATCAGCAGCAGCATCAAGTGAGAAGAAGAAGAAGTTCAAGGGAGTGAGAATGAGAAGCTGGGGCTCATGGGTTTCAGAGATTAGAGCACCAAACCAGAAAACTAGAATATGGTTGGGATCTTATTCAACTGCTGAAGCCGCAGCAAGAGCCTATGATGCTGCACTACTTTGCCTTAAAGGTTCCTCAGCCAATCTCAACTTCCCTTCAAGCTCCTCCTCACACTACATTCCTCAAGACACTGTCATGTCCCCAAAATCAATCCAAAGAGTGGCTGCAGCAGCTGCTGCTGCTGCTACCACCACCCCATTTTCTCCATCTCCACCACCTTCTCCTCCTTCTCCTCCTCTTGCTTCAACCTCTTCCTCCTCATTGGTCTCATCCCCATCAATCTCATCATCATCTCCCTCAGACCAAATTGACGATGATGTCTCACTTCTGTCACCATTTGGGGCTTACACTCCTCCTCCACCTTCACTTAACTGTGATCAAGCACATGAATCAATGGCCATGATGGAATATTGGTATGACTTGGAGGCCTTACAATCACCAAAGTATGCTGATCAAATGCTAAGTGGGGCATTCTTTGACATTGATTCAACACACTTGTTTGATGATCTCTATGAAGAAACTGACATTCGTTTGTGGAGTTTCTGCTGA 714 0.4552 MVKPEMKINTESSKAFSSSSAAASSEKKKKFKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSSSSSHYIPQDTVMSPKSIQRVAAAAAAAATTTPFSPSPPPSPPSPPLASTSSSSLVSSPSISSSSPSDQIDDDVSLLSPFGAYTPPPPSLNCDQAHESMAMMEYWYDLEALQSPKYADQMLSGAFFDIDSTHLFDDLYEETDIRLWSFC 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01372 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 181 - -
Viun8g01372 237 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Viun8g01372 237 FunFam ethylene-responsive transcription factor ERF014-like 29 89 - -
Viun8g01372 237 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Viun8g01372 237 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Viun8g01372 237 MobiDBLite consensus disorder prediction 121 135 - -
Viun8g01372 237 MobiDBLite consensus disorder prediction 10 24 - -
Viun8g01372 237 MobiDBLite consensus disorder prediction 117 158 - -
Viun8g01372 237 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Viun8g01372 237 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Viun8g01372 237 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Viun8g01372 237 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Viun8g01372 237 MobiDBLite consensus disorder prediction 136 158 - -
Viun8g01372 237 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Viun8g01372 237 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01372 Viun-Chr8 21211995 21213137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01372 1 236 AP2-EREBP Transcription Factor Family AT1G21910 44.195 5.57e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun8g01372 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01372 - - gmx:100813313 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01372 8 21211995 21213137 Viun8g01372 8 21211995 21213137 ECH