Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01340 ATGGCTCACAATCACATCTCCACCGATTCTCCTCTCTCTCGTCGTATAGTTCGTGCCTTCCTCCACTTCCTAAATTCTGTTGAACCGGGTACTGGGGTTGATGCTGAGGGGATTCAGGTTGCTAGAGAGTGTTTGACAGAGGCTTTCAAACTTAATTCGTCTCCTGTGGATGGGGATGATGGGAAATCTGATTCTCTGATTGACATATTCAAGTCTCTTGAAGCTAACAAGCAAAATGAAACTAGAAAGTCAGATGTTGATACTCCATGGAATTGTGCGAATGCTTCAAGTTCATTCTCTGGTGAGAATCCTGCTCGTGGGATGAATCATTCTGAGGCGTCAAAATCTACGGTTGAAGATTCAACACAGGAACCTTGTGCTTTCGCATCTAAAGATGAACTGTGCGGACAATTCTTTGCTGCTCTGGAGAAAAATCATTATTTCAGGAGAAATACTGATGGGAGTGATGACACAGTGCAACTGGAGAAAGCATGTTCTTTATTTGATGAGGGTTGTAAGGAGATGGTAAGATCTGGTTGTCAGCAGTTCTGTTTGAAGAGTTTGGCCGAATCACTAAAAACATTAGGTAACAAGGCAATGCAATCTAAGAAATACAATGATGCAATTGATTTGTATAATTGTGCCATTGCACTCAATGAAAAGAATGCTGTTTACTTCTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATTCGGAAGCAATTCAAGATTGTCTTAGATCTATCAGGATTGATCCAAATTACAGCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCTCAAGGAAATTACAGAGATGCTATTGATAAAGGGTTTAGAAAAGCGTTGCAGTTGGATCCAAATAATGGATCTGTCAAAGAAAATATCCGGGTAGCTGAGCAGAAATTGTTAGAAGAGCAAAACCGTGCACATCACAACCAGAATCCAACAAGATCATCTCAAGAAGTTCCAAACCAATCTGCACAAGGATCAGGAAGCCAGGGGGTGCCACCCACATTTTCTTCTGTGCCATTTAACCCCAGCCAAATGGCAAACATGTTCAGGCACATGGCCTCAAACTCTACAAATTCACAACAGAGGCCACCGACTGAGGAATGGGAACAAGAAATTAGTAGTGAATTTAGATTTGGGGCAGATATTTTAAACATGGAGCAAATTCCGGAGAATCTAACAGGGGCCGTTCAAACTATGATGGAAATGTTATCTAGGACCGTAAGCCCGGGACAACCAACAGAGGATCAAACCAATCCAAGAACAGGACCAAACTAA 1296 0.419 MAHNHISTDSPLSRRIVRAFLHFLNSVEPGTGVDAEGIQVARECLTEAFKLNSSPVDGDDGKSDSLIDIFKSLEANKQNETRKSDVDTPWNCANASSSFSGENPARGMNHSEASKSTVEDSTQEPCAFASKDELCGQFFAALEKNHYFRRNTDGSDDTVQLEKACSLFDEGCKEMVRSGCQQFCLKSLAESLKTLGNKAMQSKKYNDAIDLYNCAIALNEKNAVYFCNRAAAYTQINKYSEAIQDCLRSIRIDPNYSKAYSRLGLVYYAQGNYRDAIDKGFRKALQLDPNNGSVKENIRVAEQKLLEEQNRAHHNQNPTRSSQEVPNQSAQGSGSQGVPPTFSSVPFNPSQMANMFRHMASNSTNSQQRPPTEEWEQEISSEFRFGADILNMEQIPENLTGAVQTMMEMLSRTVSPGQPTEDQTNPRTGPN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01340 431 MobiDBLite consensus disorder prediction 96 119 - -
Viun8g01340 431 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 184 336 - -
Viun8g01340 431 Gene3D Tetratricopeptide repeat domain 186 345 IPR011990 GO:0005515
Viun8g01340 431 ProSiteProfiles TPR repeat profile. 257 291 IPR019734 GO:0005515
Viun8g01340 431 Coils Coil 291 311 - -
Viun8g01340 431 MobiDBLite consensus disorder prediction 311 349 - -
Viun8g01340 431 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Viun8g01340 431 MobiDBLite consensus disorder prediction 412 431 - -
Viun8g01340 431 FunFam Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 76 - -
Viun8g01340 431 Gene3D Immunoglobulin FC, subunit C 1 76 - -
Viun8g01340 431 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Viun8g01340 431 PANTHER LD24721P 1 420 IPR047150 -
Viun8g01340 431 SMART tpr_5 189 222 IPR019734 GO:0005515
Viun8g01340 431 SMART tpr_5 257 291 IPR019734 GO:0005515
Viun8g01340 431 SMART tpr_5 223 256 IPR019734 GO:0005515
Viun8g01340 431 Pfam TPR repeat 232 271 - -
Viun8g01340 431 SUPERFAMILY TPR-like 188 302 IPR011990 GO:0005515
Viun8g01340 431 MobiDBLite consensus disorder prediction 315 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01340 Viun-Chr8 20372357 20385664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01340 187 287 U-box Gene Family AT3G07370 30.693 5.47e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01340 K16365 - gmx:100799770 613.994