Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01314 ATGACCGATTCCAAGGTTGAAACCATTTCACGATTAGCCCAATGGAGAATCGACAACTTCGGACCCTGCTCCTACAAAAAATCCGACCCTTTCAAGCTCGGAATTTGGAACTGGTACATTTCCATAGAACGGAACAGGTACCTCTACATACATATCTTTCCTGAGCCTTCTCGGCTTTCCAAGGAACAGCCACCTGTAGCTCGCTTCATCCTACGAGTCTCCAACAACTCTGGCCCTACCCGCAAGTTTTACATCTCCCCTGTTCATGAAAGGGTGCTTAGGACAAGTGACGACTTTGTCTGGCCTGTTGATACTGCATTCCTTGGTCGCTTTGTCATTGATGTTGAATTTCTTGACCTGAAGGCCTGCCCTGGGAATGGTGGAGTAACCAGATCTGTATGGCCATCTGATGGAAAACTACAAACTGTTGCAGATCAAAGCGCTCTTCGATGCCTATCTCGCATGCTTGACGAGTCTATACATGCTGACCTCACCATCATTACTGCAGACGGTACTCTGAAGGCTCACAAAGCAGTTTTATCAGCTAGTTCTACAGTGTTCCATGGCTTGTATCTTCAGAATGGTGATGAAGAAGATACATCTACAATCCACATGGAAGATATGTCTCAAGAATCCTGCAAGTCCCTCCTTAGTTACCTGTACGGTACTATAAACCAAGAAGATTTCTGGAACCACAGGCTTCCATTGCTTGGAGCAGCCAATAAATATGAGATTGGTGATCTCAAAGACACCTGTGAAGAAAGCCTACTAGAAGATCTTAACTCGGGAAATGTTCTGGATAGGCTAAATGACGCTTGGCTTTACCAGTTACACAACTTAAAGAAAGGATGCTTCACTTTCTTATTTGATTTTGGTAAGATATATGATGTCAGAGATGAAATAAATACGTTTTTCCAACATGCTGACAGGGAGCTAATGCAGGAGATGTTTCAGGAAGTGCTTACAATTTTGAAATAG 978 0.4356 MTDSKVETISRLAQWRIDNFGPCSYKKSDPFKLGIWNWYISIERNRYLYIHIFPEPSRLSKEQPPVARFILRVSNNSGPTRKFYISPVHERVLRTSDDFVWPVDTAFLGRFVIDVEFLDLKACPGNGGVTRSVWPSDGKLQTVADQSALRCLSRMLDESIHADLTIITADGTLKAHKAVLSASSTVFHGLYLQNGDEEDTSTIHMEDMSQESCKSLLSYLYGTINQEDFWNHRLPLLGAANKYEIGDLKDTCEESLLEDLNSGNVLDRLNDAWLYQLHNLKKGCFTFLFDFGKIYDVRDEINTFFQHADRELMQEMFQEVLTILK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01314 325 SMART BTB_4 162 260 IPR000210 GO:0005515
Viun8g01314 325 Pfam BTB/POZ domain 154 258 IPR000210 GO:0005515
Viun8g01314 325 PANTHER OS08G0495500 PROTEIN-RELATED 1 324 IPR044714 -
Viun8g01314 325 Gene3D Potassium Channel Kv1.1; Chain A 136 289 IPR011333 -
Viun8g01314 325 SUPERFAMILY POZ domain 146 258 IPR011333 -
Viun8g01314 325 CDD BTB_POZ_ZBTB_KLHL-like 161 243 - -
Viun8g01314 325 ProSiteProfiles BTB domain profile. 162 221 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01314 Viun-Chr8 19733458 19738767 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun8g01314 BTB 1.7e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01314 K10523 - gmx:100775687 589.726