Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01306 ATGGCAAAGATGATGGGTCTCTTGCTCATGATTGGAGCGATGATGTTCGGAGTAAGAGGTGAGCCAACGGAAGATAAACAAGCATTGCTTGATTTCCTTCACAACATTAGCCACTCTCATCATCTGATCAACTGGGACAAGAGCTCTTCTGTGTGCAAAAGTTGGATAGGAGTGACCTGCAACTCTGAGCAATCACATGTTATTGCCATCCAACTCACCAGAACTGGATTGAGGGGTCGAATCCCACCCAACACTCTTAGTCGTCTCTCAGCGCTCCAAACTCTGAGTCTTGCCTCAAATAGCTTAACTGGTTCTTTCCCTTCTGATTTCTCTCAGCTAAATAATTTGATCTATCTGTATCTCCAATTCAACAGATTTTCTGGTCCATTGCCATCAGACTTTTCAGTGTGGAAGAATCTTAGTATTGTCAATTTATCCAACAATTCTTTTAATGGGAGCATCCCATTTTCACTTTCAAATTTGACTCATCTCTCTTCTTTAGTTCTAGCCAACAACACCCTTTCGGGTGACATTCCTGATCTCAATAATTTTGCCAACAATAACCTTAGTGGGATTGTGCCTGAATCCTTGGAGAGATTTCCAAGAGTAGCGTTTTCTGGTAACAATCTTGCTTCTTCACATGCTCTTTCCCCTTCTTTTCTTATTCAACCCCCAAATTCTAATCCAACAAGGAAAAAATCCAAAGGACTTAGGGAACCAGCCTTGTTGGGTGTCATTATTGGTGCTTGTGTCCTGGGAATTGCAGTGATAACAGCTTTTGTGATCGTGTGTTGCTATGAGAAAGGTGGTACAAGTGGACAACAAGTGATGTGTCAGAAAGGAGAAACATCCAGGAAAAAGGAAGGTTCTGAAAGTCGAGACAAGAACAGAATTGTTTTCTTTGAGGGTTGCGCTCTTGCATTTGACTTGGAGGACTTGTTGAGAGCATCTGCTGAAGTGCTTGGAAAGGGCACGTTTGGGACGGTGTACAAGGCTGCTCTAGAAGACACAACAACCGTGGCAGTGAAAAGGTTGAAGGATGTCATTGTCGGAAAACGCGAGTTTGAACAACAGATGGAGATGGTCGGAAGGATTAGGCACGATAATGTGGCTGCTTTAAGGGCATATTACTATTCAAAGGAGGAGAAACTTATGGTATATGATTACTACGAACAGGGTAATGTGTCTTCAATGTTGCATGGCAAAAGAGAAGGAAGTAGAATTTCTTTAAACTGGGATAGCCGTTTGAAAATAGCAATTGGTGTAGCAAGAGGCATTGCTCACATCCATGCTCAAGAAGGAGGAAAACTCCTCCATGGAAACATAAAGTCCTCTAACATCTTCCTCAACCCACGAGGATATGGTTGTGTATCTGACATTGGTCTTGCAACACTGATAAATCCAGCAACGAGAACAACAGGATACCGTGCCCCAGAAGCCACGGACACCCGAAAATCGGTACCCGCATCTGATGTGTATAGTTTTGGTGTGCTGCTACTTGAGCTTCTAACTGGGAGGTTTCCCTTACATGCCAAAGGAGGTGAGGAAGTTGTCCACTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAAGAGTGGACTGCAGAAGTGTTTGATGTGGAGTTGCTGAGGTATCCAAATATTGAGGAGGAAATGGTTGAGATGCTGCAAATAGGGATGGCATGTGTTGTGAGAACACCAGATCAGAGGCCAAAGATCGGGGATGTGGTGAGAATGGTGGAGGAAATTCGTAGGGTAAATGCCGAAAATAGATCATCCACTGAATCAAGGTCAGAAGGTTCCACTCCAACCCCTCATTCCATTGAGATACCTTCAACCTCTTTTGCATAA 1848 0.4356 MAKMMGLLLMIGAMMFGVRGEPTEDKQALLDFLHNISHSHHLINWDKSSSVCKSWIGVTCNSEQSHVIAIQLTRTGLRGRIPPNTLSRLSALQTLSLASNSLTGSFPSDFSQLNNLIYLYLQFNRFSGPLPSDFSVWKNLSIVNLSNNSFNGSIPFSLSNLTHLSSLVLANNTLSGDIPDLNNFANNNLSGIVPESLERFPRVAFSGNNLASSHALSPSFLIQPPNSNPTRKKSKGLREPALLGVIIGACVLGIAVITAFVIVCCYEKGGTSGQQVMCQKGETSRKKEGSESRDKNRIVFFEGCALAFDLEDLLRASAEVLGKGTFGTVYKAALEDTTTVAVKRLKDVIVGKREFEQQMEMVGRIRHDNVAALRAYYYSKEEKLMVYDYYEQGNVSSMLHGKREGSRISLNWDSRLKIAIGVARGIAHIHAQEGGKLLHGNIKSSNIFLNPRGYGCVSDIGLATLINPATRTTGYRAPEATDTRKSVPASDVYSFGVLLLELLTGRFPLHAKGGEEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACVVRTPDQRPKIGDVVRMVEEIRRVNAENRSSTESRSEGSTPTPHSIEIPSTSFA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01306 615 PANTHER OS05G0588300 PROTEIN 7 592 - -
Viun8g01306 615 Pfam Leucine rich repeat 80 126 IPR001611 GO:0005515
Viun8g01306 615 FunFam Probable inactive receptor kinase RLK902 22 182 - -
Viun8g01306 615 ProSiteProfiles Protein kinase domain profile. 315 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01306 615 SUPERFAMILY L domain-like 30 202 - -
Viun8g01306 615 Gene3D Ribonuclease Inhibitor 22 229 IPR032675 -
Viun8g01306 615 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 390 594 - -
Viun8g01306 615 SUPERFAMILY Protein kinase-like (PK-like) 319 580 IPR011009 -
Viun8g01306 615 ProSitePatterns Protein kinases ATP-binding region signature. 321 352 IPR017441 GO:0005524
Viun8g01306 615 Gene3D Phosphorylase Kinase; domain 1 280 389 - -
Viun8g01306 615 FunFam pollen receptor-like kinase 1 283 389 - -
Viun8g01306 615 Gene3D Transferase(Phosphotransferase) domain 1 390 602 - -
Viun8g01306 615 MobiDBLite consensus disorder prediction 592 615 - -
Viun8g01306 615 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Viun8g01306 615 MobiDBLite consensus disorder prediction 586 615 - -
Viun8g01306 615 Pfam Protein kinase domain 318 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01306 Viun-Chr8 19544564 19547925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01306 14 607 Receptor kinase-like Gene Family AT4G23740 54.896 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun8g01306 Pkinase 5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01306 - - gmx:100810095 1017.3