Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01295 ATGGAGATGGACAGCATTGACTGTGTGTCATTTTCTGATGGCATGGATGAGGATGAGATCCAACACCACACTCTGCATCCTCATAATCACTCTGAGTTTTCTTCTAACAAACCTCGTAATGGCGGTGCTAATAGCAATAATGTTATGGGAGCCACCGCCATTTCTCCTGCAACCAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACAAATTCAATGTACCCCCCAATTCACCAGTGCCACAATGGACACACACTGTGTTCCACTTGTAAAACAAGGGTGCACAATCGATGCCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTAGCATTGGAGAAGGTGGCTGAATCACTCGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCCGAAATCTTTCCATATTACAGCAAGCTTAAGCATGAGACTGTATGCAATTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGGGACATTCCCTTCCTTGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACAGGTTGCACATTCAACCATCGTTATGTGAAGTCCAATCCTCGTGAAGTAGAGAATGCAACTTGGATGCTAACCGTATTTCATTGTTTTGGGCAATACTTCTGCCTTCACTTCGAAGCTTTCCAGCTTGGCATGGCTCCTGTTTATATGGCATTCCTTCGATTTATGGGTGATGAGAACGAGGCTCGTAACTACAGCTACAGCCTTGAGGTTGGGGCAAATGGCAGGAAACTCATTTGGGAGGGCACACCACGAAGTATTCGCGATAGCCACAGGAAAGTCAGGGATAGCCACGACGGTCTCATTATTCAACGAAACATGGCCTTGTTTTTCTCTGGAGGTGATAAGAAGGAGCTCAAACTAAGAGTTACAGGAAGAATATGGAAGGAACAACAAAATCCAGATGCTGGGGTGTGCATACCAAATCTTTGCAGCTAA 987 0.4529 MEMDSIDCVSFSDGMDEDEIQHHTLHPHNHSEFSSNKPRNGGANSNNVMGATAISPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCIPNLCS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01295 328 FunFam E3 ubiquitin-protein ligase SINAT5-like 175 307 - -
Viun8g01295 328 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 173 307 IPR008974 GO:0005515
Viun8g01295 328 MobiDBLite consensus disorder prediction 26 48 - -
Viun8g01295 328 CDD RING-HC_SIAHs 64 102 - -
Viun8g01295 328 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270
Viun8g01295 328 SUPERFAMILY RING/U-box 52 108 - -
Viun8g01295 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 118 IPR013083 -
Viun8g01295 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 172 IPR013083 -
Viun8g01295 328 MobiDBLite consensus disorder prediction 34 48 - -
Viun8g01295 328 FunFam E3 ubiquitin-protein ligase SINAT3 118 174 - -
Viun8g01295 328 CDD Sina 180 308 - -
Viun8g01295 328 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 45 313 - -
Viun8g01295 328 FunFam E3 ubiquitin-protein ligase SINAT3 11 117 - -
Viun8g01295 328 SUPERFAMILY TRAF domain-like 119 311 - -
Viun8g01295 328 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Viun8g01295 328 Pfam Seven in absentia protein family 108 307 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01295 Viun-Chr8 19085516 19099806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01295 34 314 C3H Transcription Factor Family AT2G41980 76.512 1.00e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01295 K04506 - cave:132180687 652.899