Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01286 ATGGAGTCTCAAAAGCTCTCAATATCTTCAAGTGCTGAAACTGAGGCTGAAATCTCACCCGAAAGCAAGACAAAAAAGCTTATCCCCACCTTGCCGGAGGAACCACAGAAGGTGTCTCATATAACAGTGGAGCGCAACCGAAGAAAGCAGATGAATTTAAACTTGTCCGTATTAAGGTCACTTATGCCTTCCTTCTATGCCAAACGGGGAGACCAAGCATCAATAATTGGAGGTGTGGTCGATTACATCAACGAGTTGCAACAGGTGCTACAGTGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACAGTGATGTACTAAGCCCGAGGGTAGTTTCAAGCACAAGGGCTTCACCACTAAGTCCTAGAAAACCAGCATTGAGCCCTAGAATAAACCTACCCATTAGTCCAAGGACACCACAACCTGACAGCCCTTACAAACCCAGTTACCTTTCTCCAACTATAGCCAACTCTCCCACTTCTTCGGCTTCTTCTTCCATCAACGATAATATCAAAGAGCTTGTTGCGAGTTCCAAGTCTCTTATGGCTGATGTTGAGGTCAAGTTTTCAGGTCCACATCTTCTTCTCAAGACAGTTTCACCACCAATTCCTGGACAGCCTCTGCGAATAATATCAGCACTTGAAGACCTAGCACTTGAAATCCTTCATGTCAACATCAACATTGCTGATGAAATCATGCTGAGCTCGTTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTACTAA 783 0.4406 MESQKLSISSSAETEAEISPESKTKKLIPTLPEEPQKVSHITVERNRRKQMNLNLSVLRSLMPSFYAKRGDQASIIGGVVDYINELQQVLQCLEAKKQRKVYSDVLSPRVVSSTRASPLSPRKPALSPRINLPISPRTPQPDSPYKPSYLSPTIANSPTSSASSSINDNIKELVASSKSLMADVEVKFSGPHLLLKTVSPPIPGQPLRIISALEDLALEILHVNINIADEIMLSSFTIKIGIECQLSAEELAQQIQQTFY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01286 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 86 IPR011598 GO:0046983
Viun8g01286 260 SMART finulus 41 92 IPR011598 GO:0046983
Viun8g01286 260 MobiDBLite consensus disorder prediction 1 17 - -
Viun8g01286 260 MobiDBLite consensus disorder prediction 147 165 - -
Viun8g01286 260 Gene3D - 30 100 IPR036638 GO:0046983
Viun8g01286 260 MobiDBLite consensus disorder prediction 112 165 - -
Viun8g01286 260 PANTHER TRANSCRIPTION FACTOR FAMA 11 259 IPR044283 GO:0003700|GO:0010052
Viun8g01286 260 MobiDBLite consensus disorder prediction 1 28 - -
Viun8g01286 260 Pfam Helix-loop-helix DNA-binding domain 36 87 IPR011598 GO:0046983
Viun8g01286 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 103 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01286 Viun-Chr8 18857721 18860735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01286 36 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 55.918 1.19e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g01286 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01286 K20558 - gmx:100809717 383.645