Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01270 ATGGCTCATAAAAGACCGTATCATTGCCTTGTTATGCTCTTTGTGTTGGGAATTTGTTTTGAGGCATCGCTGGGAGACACAGATGCTCAAATTTTGATGAGGTTCAAAGGTTCCTTGTGGAATGGCCAAGCCTTAAACAACTGGGGGAGCGAGTCTAGTTTATGTAGCTGGACTGGGTTGTTGTGCCGCGAAAACCAAACATTTTATGGGTTGAGACTAGAGCATATGGAACTGGGTGGGAAGATTGATATAGAAACTTTGGTTGAATTGCCAAATTTGGTAAGCTTTAGTGTCATTAACAACACATTTGAGGGTCCGATGCCGGAGTTCAAAAAACTTGTGAGGTTAAGGGCATTGTTTCTGTCCAATAACAAGTTTTCCGGTGATATTCCCGATGATGCTTTTGAAGGCATGAGAAGACTGAAGAGAGTATTCTTGGCACAGAATGGCTTCACCGGTCCTATTCCAAAGTCACTTGCTAACTTGCCAAGACTCTGGGATTTGGACTTACGCGGGAATGGTTTTGGAGGAAACATACCAGAATTTCAACAGCAGGATTTCAGAGTATTTAATTTGTCATATAACCAATTGGAGGGTCAGATACCAGAAAGCTTAAGCAACAAGTATCCAAGTTCATTTGCTGGCAACGAAGGCTTGTGTGGAAAACCTTTAAGTTCCTGCAATGGCAACGAATCTAGATCATTGAAACCAAACCTTGCTTCTCCTCACAGCAAGGGAAAGAAGCATGGAGTCCTTATAATTGCCATTATAGTCGTCACAGTTGTAGCTTTTTCTTCAGTAGTTGCACTTCTATTTATCCACAAACACCGGAGAAAAAGGTCTAAACCCGGAATATTACCCAAGCGGGGTACTTCCCATAAAAGTGTAGGCTTCAAGGAGTCACAATATTCCGTTGATCTGACCGGTGATTTGAAGGGTGGAGATGGCGAATTGAACTTTGTTAGGGAAGACAAAGGAGGATTTGATTTGCAAGAGCTGCTTAGAGCCTCAGCAGTGGTTCTTGGTAGTGGGAGTTTCGGGTCCACTTACAAGGCTATGATTTTGAGTGGACCAACAGTGGTTGTGAAGAGGTTCAGGCACATGAACAATGTTGGGAAACAGGAGTTCAGTGAATACATGCAAAGGCTTGGAACTTTAACACACCCTAATCTTCTTCCTCTTGCAGCATTCTACTCCAGAAAAGAAGATAAGTTCTTAGTTTATGACTTCGCTGAAAATGGCAGCTTGGCCAGTCATCTACATGGTAGAGATGGCTTTGTTCTAAATTGGTCCACACGTTTAAAAATCATAAAAGGGGTGGCTAGGGGCTTAGCCTACCTATATGAAAACTTTCCAGGAAAAACCCTACCTCACGGTCATCTAAAATCCTCTAATGTGGTGTTGGATAATTCATTTGAGCCACAGTTAACTGAGTATGGCCTTGTGGAGGTGATGAATAAGAGCCATGCTCAGAAGTTCATGGCAGCGTACAAGGCCCCAGAGATGAACGAATTTGGTAGGCCAAATGTGAAAAGCGATGTGTGGTGTCTGGGGATCCTGATTCTGGAGGTGCTGACAGGGAAGTTCCCAGCAAATTATCTGAGACATGGGAAGGGTGGGAATAACTCTGACTTGGCAACATGGGTGGATTCAGTTGTGAGGGAAGAGTGGACTGGTGAGGTGTTTGATAAGGACATGTTGGGGACAAAGAATGGGGAGGGTGAGATGTTGAAGTTGTTGAGGATTGGGATGTTTTGTTGCAAATGGAATGTGGAGAATAGGTGGGATTGGAATGAGGCACTGGCCAAGATTGAAGAGGTGAAGGAGAAGGATGGTGAGGATGATTATTCTTGTTATTATGTCAGTGAAGGGGATTTGAATTCAAAGACTATGACTGAAGATGACTTCTCTTTCTCTGTCACTAATGGATGA 1932 0.4337 MAHKRPYHCLVMLFVLGICFEASLGDTDAQILMRFKGSLWNGQALNNWGSESSLCSWTGLLCRENQTFYGLRLEHMELGGKIDIETLVELPNLVSFSVINNTFEGPMPEFKKLVRLRALFLSNNKFSGDIPDDAFEGMRRLKRVFLAQNGFTGPIPKSLANLPRLWDLDLRGNGFGGNIPEFQQQDFRVFNLSYNQLEGQIPESLSNKYPSSFAGNEGLCGKPLSSCNGNESRSLKPNLASPHSKGKKHGVLIIAIIVVTVVAFSSVVALLFIHKHRRKRSKPGILPKRGTSHKSVGFKESQYSVDLTGDLKGGDGELNFVREDKGGFDLQELLRASAVVLGSGSFGSTYKAMILSGPTVVVKRFRHMNNVGKQEFSEYMQRLGTLTHPNLLPLAAFYSRKEDKFLVYDFAENGSLASHLHGRDGFVLNWSTRLKIIKGVARGLAYLYENFPGKTLPHGHLKSSNVVLDNSFEPQLTEYGLVEVMNKSHAQKFMAAYKAPEMNEFGRPNVKSDVWCLGILILEVLTGKFPANYLRHGKGGNNSDLATWVDSVVREEWTGEVFDKDMLGTKNGEGEMLKLLRIGMFCCKWNVENRWDWNEALAKIEEVKEKDGEDDYSCYYVSEGDLNSKTMTEDDFSFSVTNG 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01270 643 FunFam Pollen receptor-like kinase 1 411 618 - -
Viun8g01270 643 Gene3D Phosphorylase Kinase; domain 1 316 410 - -
Viun8g01270 643 SUPERFAMILY Protein kinase-like (PK-like) 340 604 IPR011009 -
Viun8g01270 643 SUPERFAMILY L domain-like 48 207 - -
Viun8g01270 643 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Viun8g01270 643 Gene3D Ribonuclease Inhibitor 27 135 IPR032675 -
Viun8g01270 643 ProSiteProfiles Protein kinase domain profile. 335 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01270 643 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Viun8g01270 643 Gene3D Transferase(Phosphotransferase) domain 1 411 624 - -
Viun8g01270 643 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Viun8g01270 643 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 84 179 - -
Viun8g01270 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 612 IPR046959 -
Viun8g01270 643 Pfam Protein kinase domain 340 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01270 643 Gene3D Ribonuclease Inhibitor 136 231 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01270 Viun-Chr8 18702705 18706700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01270 7 639 Receptor kinase-like Gene Family AT5G35390 46.667 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun8g01270 Pkinase 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01270 - - gmx:100781593 1023.46