Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01264 ATGGAATCACCCAACTCATCCCCCATTTTCCCACAATTCACCCTAGACACCACCAAAAACAATAACCCTGACCACTTCATTGTCGAGGACCTTTTGGATTTCTCCAACGACGATGTTGTAAACGCCGACACCATTTTCGATTCTCTCCCTGTCAACTCCACCGACTCTTCCAACGTCACCGCCGTTGATAGCTGCAACTCCTCCTCCTTCTCCGGCTACGACCCCAATACCATTCCGGACATTGGTAGCCGGAATCTCTCCGATGGTCATTTTTCCGGTGACCTATGCGTACCGTACGATGATATAGCAGAGCTGGAATGGCTTTCGAATTTCGTGGAGGAGTCGTTTTCCAGCGAGGACCTGCAGAAGATGCAGCTGATATCAGGCATGAATGCGAGAAACGACCACGTATCAAAGGCCCGCGGGTTCCACTCCGAGCCCACAAGAAACGGGTTTCACTCCGAGCCCACCAGAAACAACCCGATATTCAATTCGGAAGTGTCGGTCCCAGCCAAGGCCCGTAGCAAAAGGTCCCGCGGGCCCCCATGCAACTGGGCGTCGCGCCTCCTCGTCCTGTCCCCAACGACGTCGTCTTCAGACACTGAGGTGGTTTCTCCTGTTTCCACTCATTCCGGCACAAAAAAGCCCGCAAAGGCAACGCCGAGAAAGAAGGACAGCGGCGATGGCAGTGGCGGCGACGGACGCAGGTGTCTTCATTGCGCCACGGACAAGACTCCGCAGTGGCGAACCGGGCCCATGGGTCCAAAGACGCTGTGTAACGCTTGTGGAGTGAGGTACAAGTCGGGGCGGCTGGTGCCCGAGTACAGACCCGCGGCAAGCCCAACGTTTGTTCTGACAAAACACTCGAACTCGCACCGCAAGGTGCTGGAGCTGCGAAGGCAGAAGGAGATGGTGCGGGCCCAGCAGCACCAGCAACAACAGTTCCTACAACACCATCACCATCAGAACATGCTGTTAGACGTATCCAACAGTGAAGATTACTTGGTCCACCAACACATGGGACCCGACTACAGGCAGCTTATCTAG 1047 0.5521 MESPNSSPIFPQFTLDTTKNNNPDHFIVEDLLDFSNDDVVNADTIFDSLPVNSTDSSNVTAVDSCNSSSFSGYDPNTIPDIGSRNLSDGHFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNARNDHVSKARGFHSEPTRNGFHSEPTRNNPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTTSSSDTEVVSPVSTHSGTKKPAKATPRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQQFLQHHHHQNMLLDVSNSEDYLVHQHMGPDYRQLI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01264 348 MobiDBLite consensus disorder prediction 150 166 - -
Viun8g01264 348 PIRSF Txn_fac_GATA_plant 10 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Viun8g01264 348 PANTHER GATA TRANSCRIPTION FACTOR 18 312 - -
Viun8g01264 348 CDD ZnF_GATA 236 283 IPR000679 GO:0006355|GO:0043565
Viun8g01264 348 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Viun8g01264 348 Gene3D - 233 321 IPR013088 GO:0006355|GO:0008270
Viun8g01264 348 MobiDBLite consensus disorder prediction 196 236 - -
Viun8g01264 348 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Viun8g01264 348 MobiDBLite consensus disorder prediction 143 181 - -
Viun8g01264 348 FunFam GATA transcription factor 227 314 - -
Viun8g01264 348 MobiDBLite consensus disorder prediction 196 215 - -
Viun8g01264 348 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Viun8g01264 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 295 - -
Viun8g01264 348 MobiDBLite consensus disorder prediction 218 236 - -
Viun8g01264 348 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01264 Viun-Chr8 18519677 18521299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01264 22 348 C2C2-Gata Transcription Factor Family AT4G32890 50.000 3.32e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun8g01264 GATA 3.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01264 - - gmx:100800146 534.643