Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01254 ATGCCTGAACTCCGAAGCGGAAGAAACCGGGCAACGTTCCATGACCCAAACCCAAACCCAAACCCGAACCCGAACACAAAAACCCGCCAGAGAAGAACGAGAAGAACCACTGTCAACACCGGGAGGTACAATCGCAACACGCTCGCGCGCTGTAGAATCGGTAACCGTGAATTAGAAGAGAAGGAGCAACAACAACAGCAACACGCGCCTCTGCTTAGGGTTTCGGAAGAAGATAAAGAGAAAGAGATGGATGACGAGTTCGACAGCGGCGGTGGCCGGAGCCCCGACAAGGCTGCGCCCGCAGAAGACGAAGGAAGCACTGCCCCCATTCCCGAGAGGGTACAGGTAGGTGGTTCTCCGTTGTACAAATTAGACAGAAAACTTGGGAAGGGAGGGTTTGGACAGGTTTACGTAGGTCGGCGAGTTGGGGCTGGTGCCGGAGCGTTAGAGGTAGCATTGAAGTTTGAACATAGAAGCAGTAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAAGTTTACAATGCATTGGGTGGTAGTCATGGTGTTCCACGTGTTCATTACAAGGGACGGCAGGGTGATTACTATATTATGGTCATGGATATGCTTGGCCCTAGTCTGTGGGATGTCTGGAATAACAACTCAAACACAATGTCTGCGGAAATGGTGGCATGTATAGCAATTGAAGCCATCTCCATATTAGAGAAGATGCATTCTAAAGGGTATGTGCACGGTGATGTAAAGCCTGAGAATTTTTTGCTTGGCACTCCTGGAACTGCTGATGAGAAAAAGCTTTTCTTAGTTGATCTTGGATTAGCAACCCGTTGGCGCGATAGTTCAACTGGCCTTCATGTTGAGTATGATCAACGTCCCGATGTATTTAGAGGAACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGAAGCAGGAGAGATGATTTGGAATCTCTTGCTTACACATTGATTTTCCTTCTTCGTGGCCGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTGTGCAAGAAAAAGATGGCAACCTCACCAGAAACTTTGTGTAGTGTCTGTCCTCCACCTTTCCGGCAGTTTGTGGAGTACGTGGTGAATTTGAAATTTGATGAAGAACCAAATTATGCAAAGTATATATCACTTTTTGATGGAATTGTTGGACCAAATCCTGACTTCAGACCCATAAATACCGAAGGTGCACAAAAGCTTATATATCTGGTTGGACATAAGAGAGGACGATTAACTGTGGAAGAAGATGACGACGAACAACCAAAGAAGAGAGTCAGAATGGGAATGCCAGCAATGCAATGGATTAGTGTGTACAATGCCCGCCGACCAATGAAGCAAAGGTACCATTACAATGTTGCTGATGTGCGGCTGTCCCAACACATTGAAAAGGGATATGAGGATGGGTTATTTATCAGCAGCGTAGCTTGTTGTTCTAACCTCTGGGCACTTATTATGGATGCTGGCACTGGTTTCAACTCTCAAGTTCATGAACTCTCACCCCACTTTCTTCATAAGGAATGGATTATGGAACAGTGGGAAAATAATTATTACATTAGTGCAATAGCAGGATCTAATAATGGGAGCTCATTGGTTGTAATGTCTAAAGGGACCCAATACATGCAGCAATCCTATAAAGTCAGCGAGTCATTTCCATTTAAGTGGATCAATAAAAAATGGAGAGAAGGATTTTCTGTCACTGCTATGGCGACTGCTGGGAGTAGATGGGCAATTGTAATGTCCCGTGGTGCTGGATATTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAAGGCATTCATCGCAGGTGGGACAATGGTTACCGCATCACTTCAACTGCTGCCACATGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCGGCTGATGAAACTCAAGAGACACTCCGCACATCCGCCTTTCCTAGTAGTCACGTCAAGGAAAAATGGTCAAAAAATCTCTATATTGCATCAATATGCTATGGGAGAACAGTTTCATGA 2049 0.4558 MPELRSGRNRATFHDPNPNPNPNPNTKTRQRRTRRTTVNTGRYNRNTLARCRIGNRELEEKEQQQQQHAPLLRVSEEDKEKEMDDEFDSGGGRSPDKAAPAEDEGSTAPIPERVQVGGSPLYKLDRKLGKGGFGQVYVGRRVGAGAGALEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSNTMSAEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTADEKKLFLVDLGLATRWRDSSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCSVCPPPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDFRPINTEGAQKLIYLVGHKRGRLTVEEDDDEQPKKRVRMGMPAMQWISVYNARRPMKQRYHYNVADVRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFNSQVHELSPHFLHKEWIMEQWENNYYISAIAGSNNGSSLVVMSKGTQYMQQSYKVSESFPFKWINKKWREGFSVTAMATAGSRWAIVMSRGAGYSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSSHVKEKWSKNLYIASICYGRTVS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01254 682 ProSiteProfiles Protein kinase domain profile. 122 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01254 682 Pfam Protein kinase domain 122 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01254 682 SUPERFAMILY Protein kinase-like (PK-like) 122 396 IPR011009 -
Viun8g01254 682 ProSitePatterns Protein kinases ATP-binding region signature. 128 154 IPR017441 GO:0005524
Viun8g01254 682 SMART serkin_6 122 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01254 682 MobiDBLite consensus disorder prediction 1 115 - -
Viun8g01254 682 Gene3D Transferase(Phosphotransferase) domain 1 97 410 - -
Viun8g01254 682 CDD STKc_CK1 122 391 - -
Viun8g01254 682 FunFam casein kinase 1-like protein HD16 95 438 - -
Viun8g01254 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Viun8g01254 682 MobiDBLite consensus disorder prediction 52 100 - -
Viun8g01254 682 PANTHER CASEIN KINASE-RELATED 115 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01254 Viun-Chr8 18208599 18213661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01254 121 277 EF-hand Containing Proteins AT2G17290 30.675 6.70e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Viun8g01254 Pkinase 2.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01254 - - vvi:100254265 1135.55