Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01223 ATGGAAAATGAAGGGTGGGATAGGTGTTCTTGGTCTGCACGCACTCTGGTATCAATATTGGCTACAATAATTATCCTACTCCAACCAGATTACGGCATCGCTAAGCGACACCCACCCTGTCCTACTTCATCATGCGGCCAAATTCGCAACATAAGTTACCCATTTCGGCTCAAAGGCGACCCAGGTCAGTGCGGCGACCCAAGGTATGAGTTAGATTGCGTTAACAACGCCACTCTCTTACTAACCTTGTTGTCGGGAAAATACCATGTAAGAGATATCGACTACAACCAATACAGAATGGTTGTGATTGACCCGGGTCTAGAGGAGGAGGGCAATTGCTCCTTCATCCCTCGCAATTTCTTAACGGATCGTAATTTCGGATCACAACCGTTCAATTATGATTACTGGGTAATGGTGAGAGTAGGGTACTTGAACTGCGTGAATCCTGTGAGTGACGATCCACGATATGTTAAGGTGGAGAGGAGTGGATGTGGCAGCGGAGGGCACGTGTACGCTGTATTGGACGAGCCTTATGCGTATAGTGTGCAGGACATGAAGGTTGGGTGCGATCTAATGGTGGCTACTCTTTGGACACCGAAACAGAATGTTACCTACGCTTGTGATAGGAAGAACACCGAGACTATGTGCTCTCCAAGGGAGTTTGAAGTGCTTGAAAAATCACCGGCGGGGAATGTTACATACGATGATATCCATCGCATAATAAGTGAGGGATTTTGGTTGTCCTGGTTGCCCACTGTTTGCGAGAAACAATGTGGAAGGGGGGTGATGTGTCAGATTAGCAATGAGTCCAGAGGAGAAGTCTTCTGTATGAACCATTACTGTAATTACGCCTACCACACCCACAAGTGCGAACCTTGGCAAAAGATTTTCGGCTATATCCGAGGTTATCTTCAAGGCATTATTTATGGAATAGGTAGCAGAATAACATTCAGCCAATACCCAGATGTGCAATATTTTGATGAAGGAATTTTCATAGGACGAAACGGTACATTAATATTTTTTGCAGCCAGATATCTGTTTGGAGTTGTACTTATTCTTGTGTTATTGATCTACAAATGGCGACGAAGACATTCTTCGATATATGAAAATATTGAAAATTTCTTGCTAGATAGCCATCTAAATCCCATCAGATACCAATACAATGAAATAAAAAAAATGACTAGAGGTTTCAAAGTGAAACTGGGTCAAGGAGGCTTTGGTGTTGTATATAAAGGAAAACTCCAGAGTGGATTGGAGGTAGCAGTAAAGATATTGAGCAAATCTGATGATGATGGACAGGATTTCATAAATGAAGTAGCTACTATTGGAACAATACATCATATAAATGTAGTGCGTCTAATTGGATATTGTGTTCATAGAAAAAAGTGTGCACTAGTTTATGAATTTATGTCAAATGGATCGTTGGATAAATACATTTTTTCCAAAGAAGAAGGCATTTGTTTAAGCTATGATAAAATACATGAAATATCTCTTGGAATAGCACGTGGGATTGCATATTTGCATCAAGGTTGTGATATGCAAATTTTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGTTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTACATGCTACAATTGATGGTGTTGTCAATATGACCGCAGCAAGAGGAACATTGGGTTACATGGCTCCAGAGTTATTTTATAACAATATGGGTGGGGTAACATATAAAGCTGATGTATATAGCTTTGGAATGCTTTTAATGGAAATGGCAAGTAAAAGAAGGAACTCAAATCCGGACGCAGAGCATTCAAGTCAACATTATTTTCCTTTTTGGATTTATGATCAATTTAAAAAAGCAAAACATGTTGACATGCAAGATGCTTCAGAAGAAGACAATATTCTAGTAAAAAAGATGTTCTTAGTTGCACTTTGGTGTATTCAATTAAAACCAAGTGATCGTCCTTCAATGAATAAGGTAATAATGATGCTTGAAGGGATGGCCGAAAGCCTTGAATTACCTCCAAGGCCTTCCTTTTATAAAGTTGAATCATATGAACATGATGACATTAGCTCTGATGTCGCCAACTACACTTACTCTACTAGTCACCATGGTGAAAGCCTAACAATGGATCACCATATAAGTAAGAAAACTTAA 2160 0.3963 MENEGWDRCSWSARTLVSILATIIILLQPDYGIAKRHPPCPTSSCGQIRNISYPFRLKGDPGQCGDPRYELDCVNNATLLLTLLSGKYHVRDIDYNQYRMVVIDPGLEEEGNCSFIPRNFLTDRNFGSQPFNYDYWVMVRVGYLNCVNPVSDDPRYVKVERSGCGSGGHVYAVLDEPYAYSVQDMKVGCDLMVATLWTPKQNVTYACDRKNTETMCSPREFEVLEKSPAGNVTYDDIHRIISEGFWLSWLPTVCEKQCGRGVMCQISNESRGEVFCMNHYCNYAYHTHKCEPWQKIFGYIRGYLQGIIYGIGSRITFSQYPDVQYFDEGIFIGRNGTLIFFAARYLFGVVLILVLLIYKWRRRHSSIYENIENFLLDSHLNPIRYQYNEIKKMTRGFKVKLGQGGFGVVYKGKLQSGLEVAVKILSKSDDDGQDFINEVATIGTIHHINVVRLIGYCVHRKKCALVYEFMSNGSLDKYIFSKEEGICLSYDKIHEISLGIARGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLHATIDGVVNMTAARGTLGYMAPELFYNNMGGVTYKADVYSFGMLLMEMASKRRNSNPDAEHSSQHYFPFWIYDQFKKAKHVDMQDASEEDNILVKKMFLVALWCIQLKPSDRPSMNKVIMMLEGMAESLELPPRPSFYKVESYEHDDISSDVANYTYSTSHHGESLTMDHHISKKT 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01223 719 PANTHER RUST RESISTANCE KINASE LR10-RELATED 368 685 IPR045874 GO:0004672
Viun8g01223 719 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Viun8g01223 719 FunFam serine/threonine-protein kinase PBS1-like 365 469 - -
Viun8g01223 719 Pfam Protein kinase domain 399 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01223 719 SMART serkin_6 395 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01223 719 Gene3D Phosphorylase Kinase; domain 1 373 469 - -
Viun8g01223 719 Gene3D Transferase(Phosphotransferase) domain 1 470 675 - -
Viun8g01223 719 Pfam Wall-associated receptor kinase galacturonan-binding 40 104 IPR025287 GO:0030247
Viun8g01223 719 SUPERFAMILY Protein kinase-like (PK-like) 380 666 IPR011009 -
Viun8g01223 719 ProSiteProfiles Protein kinase domain profile. 395 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01223 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Viun8g01223 719 FunFam PR5-like receptor kinase 470 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01223 Viun-Chr8 17198085 17208497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01223 18 681 Receptor kinase-like Gene Family AT5G38260 31.664 6.37e-102 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01223 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01223 - - gmx:100820366 941.799