Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01219 ATGGAAAATGAAGGGTGGGATAGGTGTTCTTGGTCTGCACGCACTCTGGTATCAATATTGGCTACAATAATTATCCTACTCCAACCAGATTACGGCATCGCTAAGCGACACCCACCCTGTCCTACTTCATCATGCGGCCAAATTCGCAACATAAGTTACCCATTTCGGCTCAAAGGCGACCCAGGTCAGTGCGGCGACCCAAGGTATGAGTTAGATTGCGTTAACAACGCCACTCTCTTACTAACCTTGTTGTCGGGAAAATACCATGTAAGAGATATCGACTACAACCAATACAGAATGGTTGTGATTGACCCGGGTCTAGAGGAGGAGGGCAATTGCTCCTTCATCCCTCGCAATTTCTTAACGGATCGTAATTTCGGATCACAACCGTTCAATTATGATTACTGGGTAATGGTGAGAGTAGGGTACTTGAACTGCGTGAATCCTGTGAGTGACGATCCACGATATGTTAAGGTGGAGAGGAGTGGATGTGGCAGCGGAGGGCACGTGTACGCTGTATTGGACGAGCCTTATGCGTATAGTGTGCAGGACATGAAGGTTGGGTGCGATCTAATGGTGGCTACTCTTTGGACACCGAAACAGAATGTTACCTACGCTTGTGATAGGAAGAACACCGAGACTATGTGCTCTCCAAGGGAGTTTGAAGTGCTTGAAAAATCACCGGCGGGGAATGTTACATACGATGATATCCATCGCATAATAAGTGAGGGATTTTGGTTGTCCTGGTTGCCCACTGTTTGCGAGAAACAATGTGGAAGGGGGGTGATGTGTCAGATTAGCAATGAGTCCAGAGGAGAAGTCTTCTGTATGAACCATTACTGTAATTACGCCTACCACACCCACAAGTGCGAACCTTGGCAAAAGATTTTCGGCTATATCCGAGGTTATCTTCAAGGCATTATTTATGGAATAGGTAGCAGAATAACATTCAGCCAATACCCAGATGTGCAATATTTTGATGAAGGAATTTTCATAGGACGAAACGGTACATTAATATTTTTTGCAGCCAGATATCTGTTTGGAGTTGTACTTATTCTTGTGTTATTGATCTACAAATGGCGACGAAGACATTCTTCGATATATGAAAATATTGAAAATTTCTTGCTAGATAGCCATCTAAATCCCATCAGATACCAATACAATGAAATAAAAAAAATGACTAGAGGTTTCAAAGTGAAACTGGGTCAAGGAGGCTTTGGTGTTGTATATAAAGGAAAACTCCAGAGTGGATTGGAGGTAGCAGTAAAGATATTGAGCAAATCTGATGATGATGGACAGGATTTCATAAATGAAGTAGCTACTATTGGAACAATACATCATATAAATGTAGTGCGTCTAATTGGATATTGTGTTCATAGAAAAAAGTGTGCACTAGTTTATGAATTTATGTCAAATGGATCGTTGGATAAATACATTTTTTCCAAAGAAGAAGGCATTTGTTTAAGCTATGATAAAATACATGAAATATCTCTTGGAATAGCACGTGGGATTGCATATTTGCATCAAGGTTGTGATATGCAAATTTTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGTTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTACATGCTACAATTGATGGTGTTGTCAATATGACCGCAGCAAGAGGAACATTGGGTTACATGGCTCCAGAGTTATTTTATAACAATATGGGTGGGGTAACATATAAAGCTGATGTATATAGCTTTGGAATGCTTTTAATGGAAATGGCAAGTAAAAGAAGGAACTCAAATCCGGACGCAGAGCATTCAAGTCAACATTATTTTCCTTTTTGGATTTATGATCAATTTAAAAAAGCAAAACATGTTGACATGCAAGATGCTTCAGAAGAAGACAATATTCTAGTAAAAAAGATGTTCTTAGTTGCACTTTGGTGTATTCAATTAAAACCAAGTGATCGTCCTTCAATGAATAAGCAGGTGATATGGCTTTGCTAG 2001 0.3983 MENEGWDRCSWSARTLVSILATIIILLQPDYGIAKRHPPCPTSSCGQIRNISYPFRLKGDPGQCGDPRYELDCVNNATLLLTLLSGKYHVRDIDYNQYRMVVIDPGLEEEGNCSFIPRNFLTDRNFGSQPFNYDYWVMVRVGYLNCVNPVSDDPRYVKVERSGCGSGGHVYAVLDEPYAYSVQDMKVGCDLMVATLWTPKQNVTYACDRKNTETMCSPREFEVLEKSPAGNVTYDDIHRIISEGFWLSWLPTVCEKQCGRGVMCQISNESRGEVFCMNHYCNYAYHTHKCEPWQKIFGYIRGYLQGIIYGIGSRITFSQYPDVQYFDEGIFIGRNGTLIFFAARYLFGVVLILVLLIYKWRRRHSSIYENIENFLLDSHLNPIRYQYNEIKKMTRGFKVKLGQGGFGVVYKGKLQSGLEVAVKILSKSDDDGQDFINEVATIGTIHHINVVRLIGYCVHRKKCALVYEFMSNGSLDKYIFSKEEGICLSYDKIHEISLGIARGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLHATIDGVVNMTAARGTLGYMAPELFYNNMGGVTYKADVYSFGMLLMEMASKRRNSNPDAEHSSQHYFPFWIYDQFKKAKHVDMQDASEEDNILVKKMFLVALWCIQLKPSDRPSMNKQVIWLC 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01219 666 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Viun8g01219 666 FunFam PR5-like receptor kinase 470 665 - -
Viun8g01219 666 SUPERFAMILY Protein kinase-like (PK-like) 380 660 IPR011009 -
Viun8g01219 666 Gene3D Phosphorylase Kinase; domain 1 373 469 - -
Viun8g01219 666 ProSiteProfiles Protein kinase domain profile. 395 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01219 666 Pfam Protein kinase domain 399 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01219 666 SMART serkin_6 395 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g01219 666 FunFam serine/threonine-protein kinase PBS1-like 365 469 - -
Viun8g01219 666 PANTHER RUST RESISTANCE KINASE LR10-RELATED 368 662 IPR045874 GO:0004672
Viun8g01219 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Viun8g01219 666 Pfam Wall-associated receptor kinase galacturonan-binding 40 104 IPR025287 GO:0030247
Viun8g01219 666 Gene3D Transferase(Phosphotransferase) domain 1 470 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01219 Viun-Chr8 17198085 17208497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01219 18 662 Receptor kinase-like Gene Family AT5G38260 31.364 1.39e-93 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g01219 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01219 - - gmx:100820366 894.034